Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12c05
         (863 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY146760-1|AAO12075.1|  313|Anopheles gambiae odorant-binding pr...    27   0.74 
AF393487-1|AAL60412.1|  304|Anopheles gambiae odorant binding pr...    27   0.74 
AY146732-1|AAO12092.1|  327|Anopheles gambiae odorant-binding pr...    27   0.97 
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    24   6.9  
AF515521-1|AAM61888.1|  233|Anopheles gambiae glutathione S-tran...    23   9.1  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    23   9.1  

>AY146760-1|AAO12075.1|  313|Anopheles gambiae odorant-binding
           protein AgamOBP31 protein.
          Length = 313

 Score = 27.1 bits (57), Expect = 0.74
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 286 SSECRPTSSQCIHISYNNYKKLYKKETFKCK*VDVGNFRNCPQFI 152
           +SEC   +     +  NN  + Y  ETF+C   + GN   CPQ++
Sbjct: 107 TSECLERNVHTAELP-NNCCQAY--ETFQCYFREFGNLVTCPQYV 148


>AF393487-1|AAL60412.1|  304|Anopheles gambiae odorant binding
           protein 1 protein.
          Length = 304

 Score = 27.1 bits (57), Expect = 0.74
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 286 SSECRPTSSQCIHISYNNYKKLYKKETFKCK*VDVGNFRNCPQFI 152
           +SEC   +     +  NN  + Y  ETF+C   + GN   CPQ++
Sbjct: 107 TSECLERNVHTAELP-NNCCQAY--ETFQCYFREFGNLVTCPQYV 148


>AY146732-1|AAO12092.1|  327|Anopheles gambiae odorant-binding
           protein AgamOBP44 protein.
          Length = 327

 Score = 26.6 bits (56), Expect = 0.97
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 211 ETFKCK*VDVGNFRNCPQFIQ 149
           ETF+C   + GN   CPQ+++
Sbjct: 129 ETFQCYFQEFGNLVTCPQYVR 149


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 23.8 bits (49), Expect = 6.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 346 TTSRGTEPTKTVESSTRARYSSECRPTSS 260
           +TSR    T+T  ++TRA  S++  P  S
Sbjct: 570 STSRARTATRTATTTTRALRSAKKEPAES 598


>AF515521-1|AAM61888.1|  233|Anopheles gambiae glutathione
           S-transferase u1 protein.
          Length = 233

 Score = 23.4 bits (48), Expect = 9.1
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -1

Query: 662 FWEKFDPENYSIWYAEYKYPEELAKVFMSCNLITGMFQRLDKMRKQA 522
           +++ F   + S+W    K  EE+A+   +   +TGM   +  +RK A
Sbjct: 185 WYDGFKQAHPSLWAIAAKGMEEIAEFEKNPPDLTGMVHPIHPIRKPA 231


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 23.4 bits (48), Expect = 9.1
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -2

Query: 376 RARRPRNLSRTTSRGTEPTKTVESSTRARYSSECRPTS 263
           R R PR+  R  S  + P +    STR       RPTS
Sbjct: 258 RRRSPRSGGRWPSCRSPPARRRSRSTRPTSWPRSRPTS 295


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 899,027
Number of Sequences: 2352
Number of extensions: 19787
Number of successful extensions: 61
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 92199573
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)