Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12c04
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...   157   6e-40
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc...   152   3e-38
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    29   0.35 
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    28   0.80 
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    28   0.80 
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    28   0.80 
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    27   1.1  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    26   2.4  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   3.2  
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    25   4.3  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    25   4.3  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   4.3  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   7.4  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    25   7.4  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    25   7.4  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    25   7.4  

>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score =  157 bits (382), Expect = 6e-40
 Identities = 82/132 (62%), Positives = 96/132 (72%), Gaps = 1/132 (0%)
 Frame = -3

Query: 395 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 216
           MSE   TIRTRKFMTNRLL RKQMV D+LHPGK  +SK EIREKLA+MYK   + V  FG
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFG 59

Query: 215 FKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVR 39
            +T+FGGG+STGFALIYD+ +  KKFEP +RL R G  E  ++  R+QRK+RKNR KKV 
Sbjct: 60  LRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVF 119

Query: 38  GTKKSKVGAASK 3
           GT K      SK
Sbjct: 120 GTGKRLAKRKSK 131


>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score =  152 bits (368), Expect = 3e-38
 Identities = 77/132 (58%), Positives = 94/132 (71%), Gaps = 1/132 (0%)
 Frame = -3

Query: 395 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 216
           MSE   TIRTRKFMTNRLL RKQMV D+LHPGK  +SK ++REKL +MYK     V  FG
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFG 59

Query: 215 FKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVR 39
            +T++GGG++TGFALIYD ++  KKFEP +RL R G  E  ++  R+QRK+RKNR KKV 
Sbjct: 60  LRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVF 119

Query: 38  GTKKSKVGAASK 3
           GT K      SK
Sbjct: 120 GTGKRLAKRKSK 131


>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 29.1 bits (62), Expect = 0.35
 Identities = 29/79 (36%), Positives = 38/79 (48%)
 Frame = -2

Query: 330 ADGLRCFTSRKTNRQQDRDP*EARQNVQGYSRCSVRIRFQDKLRRWQVNWIRFDLRHTRS 151
           A G    +SR    Q+DRD  E R+N +   R S   R++D  RR      R D R+ R 
Sbjct: 14  AQGRNYESSRSRGDQRDRDYREYRRNYRD-ERSS--RRYEDSQRRDYSPARRRD-RYERH 69

Query: 150 GQEVRAQAQVSPPRPVREE 94
            + VR +   SP RPV  E
Sbjct: 70  RESVREE---SPRRPVEHE 85


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 27.9 bits (59), Expect = 0.80
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -3

Query: 155 DLAKKFEPKHRLARHGLYEKKRPTR--KQRKERKNRMKKVRGTKKSK 21
           D  KK   + +L      ++KR  R  + +K  K+ +KKV GTKK K
Sbjct: 155 DKLKKKSKRLKLDDSHTQKRKRKVRDKESKKSSKSGLKKVSGTKKVK 201



 Score = 24.6 bits (51), Expect = 7.4
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = -3

Query: 149 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 45
           +KK + +    +     +K   +K++KE+K+++KK
Sbjct: 125 SKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKK 159


>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 27.9 bits (59), Expect = 0.80
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -3

Query: 101 EKKRPTRKQRKERKNRMKKVRGTKKSKVGAASK 3
           EKK    +Q++  +N +KK R +KKSK G A K
Sbjct: 194 EKKAMLMRQQRREEN-LKKRRESKKSKKGKAPK 225


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 27.9 bits (59), Expect = 0.80
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 143 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 45
           K+ P  R    G + +KR  RK++ E+KN   K
Sbjct: 539 KYRPNARKPLVGRHREKRQLRKEKPEKKNNSTK 571


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 278 EIREKLAKMYKVTPDVVFVFGFKTNFGG 195
           +++E LAK YK+ P  +F   F T+  G
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTSLNG 313


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 231 SVRIRFQDKLRRWQVNWIRFDLRHTRSGQEVRAQ-AQVSPPRPVREEEA 88
           S   R + +LRR +      DLR +R G E RA+ A+   PR V E  A
Sbjct: 385 SEAFRRRQELRRERRRQAEKDLRLSRMGAEKRAKLAEKDRPRDVAERVA 433


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 363 ASANSRCSFTHFELFSII 416
           +S  SRCSFT FE+ SI+
Sbjct: 777 SSVISRCSFTDFEINSIL 794


>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -3

Query: 101 EKKRPTRKQRKERKNRMKKVRGTKKS 24
           E+ +P  ++ +E +NR+ ++RGT  S
Sbjct: 90  ERLKPQDERTQEERNRVDEIRGTPMS 115


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -3

Query: 98  KKRPTRKQRKERKNRMKKVRGTKKSK 21
           +K+  +K++KE+K + +K    KKS+
Sbjct: 449 RKKEAKKEKKEKKEKKEKKEKKKKSE 474


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1347

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 95   KRPTRKQRKERKNRMKKVRGTKKSKVG 15
            K PT+K ++E+K  + K     K+ VG
Sbjct: 1121 KAPTKKSQREKKKELSKQVPISKTNVG 1147


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 196 PPKFVLKPNTNTTSGVTLYILASFS 270
           PPK  LKP+ +T+  ++ Y LA  S
Sbjct: 818 PPKEPLKPSLDTSPELSKYSLAKLS 842


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = -3

Query: 143 KFEPKHRLARHGLYEKKRPT-----RKQRKERKNRMKKV 42
           +F  KH L RHG  EKKR       R+Q   +  R KKV
Sbjct: 58  EFGTKH-LRRHGRIEKKRRNWKGLFRRQSNWKDGRCKKV 95


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 268 SRISVLLTVGFPGCKTSQTICLRANNL 348
           SRI  + ++G    K  Q++CLR N +
Sbjct: 48  SRIQSMASLGLERFKNLQSLCLRQNQI 74


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 387 RNSDYSHSQVHDQQIVGAQADGLRCFTSRKTNRQQDRDP 271
           +NS++S +   +Q    + ADG R +   +   Q+ R+P
Sbjct: 449 KNSEFSETNAMNQTSNHSHADGQRYYRPEQDRSQRLRNP 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,970,550
Number of Sequences: 5004
Number of extensions: 39750
Number of successful extensions: 144
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)