Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12c04
(463 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526... 178 2e-45
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 174 2e-44
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 138 3e-33
01_04_0061 + 15555096-15555428,15555768-15555775,15557117-15557495 30 1.0
01_01_0502 - 3688940-3689149,3689180-3689251,3690028-3690064,369... 30 1.0
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 29 1.4
01_06_0355 + 28657833-28660665,28660762-28661126 29 2.4
07_01_0796 + 6265106-6265304,6265723-6265963,6266063-6266423 28 4.2
01_06_1355 + 36610390-36610479,36611906-36612063,36612144-366125... 28 4.2
11_04_0350 - 16658497-16659015 27 5.6
06_03_0337 + 19678152-19678484,19678616-19678801,19679232-196794... 27 5.6
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 27 5.6
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118... 27 5.6
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 27 7.3
03_01_0078 - 635026-635252,635853-635934,636081-636089 27 7.3
11_06_0081 + 19886848-19888050,19888243-19888896 27 9.7
09_03_0108 + 12421719-12421749,12422794-12422892,12423370-12423890 27 9.7
06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660... 27 9.7
01_07_0042 + 40697153-40697407,40697479-40698081 27 9.7
01_01_0801 - 6241710-6241869,6242522-6242689,6243202-6243269,624... 27 9.7
>01_06_0550 -
30151494-30151526,30151620-30151706,30152458-30152628,
30152716-30152757,30152856-30152939
Length = 138
Score = 178 bits (433), Expect = 2e-45
Identities = 83/126 (65%), Positives = 102/126 (80%), Gaps = 1/126 (0%)
Frame = -3
Query: 377 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 201
T+RTRKFMTNRLL+RKQ V +V+HPG+P VSK E++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFRTHF 70
Query: 200 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSK 21
GGGKSTGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERKNR KK+RG KK+K
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKKTK 130
Query: 20 VGAASK 3
G A K
Sbjct: 131 AGDAGK 136
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 174 bits (424), Expect = 2e-44
Identities = 82/126 (65%), Positives = 101/126 (80%), Gaps = 1/126 (0%)
Frame = -3
Query: 377 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKTNF 201
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 200 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSK 21
GGGKSTGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERKNR KK+RG KK+K
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKKTK 130
Query: 20 VGAASK 3
G A K
Sbjct: 131 AGDAGK 136
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 138 bits (333), Expect = 3e-33
Identities = 79/154 (51%), Positives = 99/154 (64%), Gaps = 29/154 (18%)
Frame = -3
Query: 377 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 201
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 200 GGGKSTGFALIYDTLDLAKKFEPKHRLAR-------HGLYEKK----------------- 93
GGGKSTGF LIYD LD AKK+EPK+RL R +G + +
Sbjct: 71 GGGKSTGFGLIYDNLDAAKKYEPKYRLIRVQLLSVGNGCFVSRGVLGIPCEVRFGNLNGL 130
Query: 92 -RPTRKQRK---ERKNRMKKVRGTKKSKVGAASK 3
K RK ERKNR KK+RG KK+K G A K
Sbjct: 131 ATKVEKSRKQMKERKNRAKKIRGVKKTKAGDAGK 164
>01_04_0061 + 15555096-15555428,15555768-15555775,15557117-15557495
Length = 239
Score = 29.9 bits (64), Expect = 1.0
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -3
Query: 206 NFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLY-EKKRPTRKQRKERKNR-MKKVRGT 33
NFGGG + L+Y L+ +++++ G Y +++ ERK + +++ +
Sbjct: 100 NFGGGAAVAVGLLYRVLE-ESSHNKRNKISESGAYTSSSNQEIEEKTERKEKCLERQKAA 158
Query: 32 KKSKVG 15
K+ K G
Sbjct: 159 KQRKKG 164
>01_01_0502 -
3688940-3689149,3689180-3689251,3690028-3690064,
3691224-3691705
Length = 266
Score = 29.9 bits (64), Expect = 1.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 183 WIRFDLRHTRSGQEVRAQAQVSPPRPVREEEAHA 82
W R +R + G E AQ+ PPRPV + +HA
Sbjct: 155 WSRL-VRTSEHGDEQLTGAQLRPPRPVEADASHA 187
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 29.5 bits (63), Expect = 1.4
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = -3
Query: 101 EKKRPTRKQRKERKNRMKKVRGTKKSK 21
+KK+ +K++K++KN+ KK + KK K
Sbjct: 75 KKKKKKKKKKKKKKNKKKKKKKKKKKK 101
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +1
Query: 217 PNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 396
PN S +TL L + + L +GFP CK + + + LL ++V +PS++
Sbjct: 670 PNGGVFSNITLQSLRGNTALCGLPRLGFPHCKNDHPLQGKKSRLL------KVVLIPSIL 723
>07_01_0796 + 6265106-6265304,6265723-6265963,6266063-6266423
Length = 266
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -3
Query: 113 HGLYEKKRPTRKQRKERKNRMKKVRGTKKSK 21
H EKK+ ++K+RK R KK + KKSK
Sbjct: 224 HKKKEKKKEKSSEKKDRKERRKK-KDKKKSK 253
>01_06_1355 +
36610390-36610479,36611906-36612063,36612144-36612523,
36612600-36613583,36614228-36614292,36614946-36615024,
36615480-36615529,36616595-36616781,36617922-36617957,
36619226-36619348,36619466-36620386,36620506-36620636
Length = 1067
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 268 SRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 396
+R+ V + +GF C+ QT C R+ +++ N+ A+P+ +
Sbjct: 364 TRMLVTVGLGFSSCQPEQTQCNRSAPVVLANMNNVSFALPNTV 406
>11_04_0350 - 16658497-16659015
Length = 172
Score = 27.5 bits (58), Expect = 5.6
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = -3
Query: 101 EKKRPTRKQRKERKNRMKKVRGTKK 27
+KK+ +K++K++K + KKVR T++
Sbjct: 36 KKKKKKKKKKKKKKKKKKKVRYTQE 60
>06_03_0337 +
19678152-19678484,19678616-19678801,19679232-19679417,
19680840-19680926,19681045-19681086,19681164-19681253,
19681399-19681503,19681797-19681835,19681914-19682018,
19682463-19682531,19682587-19682736,19683156-19683335
Length = 523
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -3
Query: 137 EPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGAASK 3
EP H A + T K+R+ +MK+ + +K K G K
Sbjct: 34 EPVHNTAACNSEGENNATGKRREHNNKKMKEEKSKRKKKQGEGKK 78
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 27.5 bits (58), Expect = 5.6
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = -3
Query: 164 DTLDLAKKFEPKHRLA-RHGLYEK-KRPTRKQ--RKERKNRMKKVRGTKKSK 21
D+ DL+ + + R RH +K KR RK+ R+ERK R + + +KSK
Sbjct: 260 DSSDLSSSSDDRRRRRKRHSKKDKHKRGKRKRDRRRERKRRKRDRKSKQKSK 311
>01_05_0740 - 24809951-24810394,24810622-24810700,24811651-24811809,
24812083-24812246,24812436-24812624,24813151-24813408,
24813463-24813951,24814062-24814262,24814368-24814639,
24814661-24814685,24814776-24814937,24815065-24815104,
24815244-24815353,24815812-24815898,24816013-24816507
Length = 1057
Score = 27.5 bits (58), Expect = 5.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 110 GLYEKKRPTRKQRKERKNRMKK 45
G+YE++R R+Q KER+ + K
Sbjct: 999 GVYERERNMRQQEKERRKQQSK 1020
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -3
Query: 161 TLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTK-KSK 21
+LD + + +H+ + +K R + + K +K + +K RGTK KSK
Sbjct: 207 SLDTSSSSDHRHKRRKSSKKDKHRSAKGKSKHKKTK-RKSRGTKRKSK 253
>03_01_0078 - 635026-635252,635853-635934,636081-636089
Length = 105
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = -3
Query: 164 DTLDLAKKFEP--KHRLARHG-LYEKKRPTRKQRKERKNRMKKVRGTKKSKVG 15
DT+++AKK K + G E+K+P +K+ K+ + + +K K+ K G
Sbjct: 51 DTVEIAKKLRKIGKIDIVSVGPAKEEKKPEKKEEKKEEKKEEKKEEKKEEKKG 103
>11_06_0081 + 19886848-19888050,19888243-19888896
Length = 618
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +1
Query: 148 ARSSVS*IKANPVDLPPPKFVLKPNTNTTSGVTLYILASFSRISVLLTV 294
++ VS +++ P PPP P TN + +Y+ + ++VL V
Sbjct: 252 SKPDVSQLRSPPPPPPPPPAAPAPTTNRKNHTGVYVGIGAAAVAVLAVV 300
>09_03_0108 + 12421719-12421749,12422794-12422892,12423370-12423890
Length = 216
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -2
Query: 243 YSRCSVRIR-FQDKLRRWQVNWI 178
+ RC VR+ F KLR W ++W+
Sbjct: 134 FLRCVVRVNNFPTKLRPWDLSWL 156
>06_03_0785 -
24563310-24565004,24565302-24565384,24565484-24566039,
24566397-24566513,24566565-24567131,24568632-24568702,
24569833-24569903,24570270-24570441,24571229-24572212,
24573128-24574808
Length = 1998
Score = 26.6 bits (56), Expect = 9.7
Identities = 25/102 (24%), Positives = 50/102 (49%)
Frame = -3
Query: 383 TATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 204
+++I +F+ R R+++V +L K E R K A+ + +V+ + G N
Sbjct: 169 SSSISIGEFVVGRQKEREELVHQLLEQS----DKPESRSKGARSTSL--EVITIVG---N 219
Query: 203 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRK 78
G GK+T LIY+ + F+ + + +++K R T++
Sbjct: 220 GGIGKTTLAQLIYNDKRIEDNFDMRAWVCVSHVFDKVRITKE 261
>01_07_0042 + 40697153-40697407,40697479-40698081
Length = 285
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 142 FLARSSVS*IKANPVDLPPPKFVLKPN-TNTTSGVTLYILAS 264
+ +SSV + + LPPP FV P +NT + + Y + S
Sbjct: 134 YRTQSSVRSVSSTCKPLPPPPFVRDPKFSNTRTTINSYAVVS 175
>01_01_0801 -
6241710-6241869,6242522-6242689,6243202-6243269,
6243372-6243593,6243676-6243774
Length = 238
Score = 26.6 bits (56), Expect = 9.7
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 246 LVHFGELLTDLGLADGWFSWM*NIANHLLARQQSVGHELASANSR 380
LV FG+ +T+L ADG W +A+H + V + N+R
Sbjct: 5 LVLFGDSITELSFADG--GWGAALADHFARKADVVLRGFSGYNTR 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,286,998
Number of Sequences: 37544
Number of extensions: 275677
Number of successful extensions: 917
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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