Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12c03
(852 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical pr... 33 0.20
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p... 31 1.4
AL031630-22|CAA20995.2| 454|Caenorhabditis elegans Hypothetical... 31 1.4
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 29 4.2
AF067613-14|ABA54416.1| 395|Caenorhabditis elegans Hypothetical... 29 5.5
AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical ... 28 7.3
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 28 9.7
U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical pr... 28 9.7
AF039045-8|AAB94199.1| 300|Caenorhabditis elegans Hypothetical ... 28 9.7
AF039045-7|AAB94207.1| 333|Caenorhabditis elegans Hypothetical ... 28 9.7
>Z81458-4|CAB03824.1| 623|Caenorhabditis elegans Hypothetical
protein C03E10.5 protein.
Length = 623
Score = 33.5 bits (73), Expect = 0.20
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = -3
Query: 811 SSTGAAKSFCVKLGPVLLRTASPL*TTKR*WTCTSSPTSNPHAPTGATSSSLNTLLGGKK 632
SST + S + + T++P T K T TS+PTS + T A ++ +
Sbjct: 162 SSTASVSSTILSSTATTMVTSTPT-TEKSSTTTTSTPTSEATSTTTAMITTTSGTTENPT 220
Query: 631 TT-CPTK*SELWSHPT 587
TT CPTK HPT
Sbjct: 221 TTDCPTKVCRYGFHPT 236
>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +3
Query: 603 NSDYFVGHVVF-FPPKSVLSEELVAPVGACGFEVGDEVHVHHLLVVYNGEAVLNKTGPSF 779
NS YFVGH F F +S ++++A V A + G+ V + +V N E++ S
Sbjct: 1478 NSPYFVGHTAFAFVDESDTVDDVLATVTAFDKDRGENGIVTYSIVSGNEESLFKIDAKSG 1537
Query: 780 TQKLFAAPVD 809
+L A P+D
Sbjct: 1538 EVRL-AKPLD 1546
>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
F25F2.2 protein.
Length = 4307
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +3
Query: 603 NSDYFVGHVVF-FPPKSVLSEELVAPVGACGFEVGDEVHVHHLLVVYNGEAVLNKTGPSF 779
NS YFVGH F F +S ++++A V A + G+ V + +V N E++ S
Sbjct: 1478 NSPYFVGHTAFAFVDESDTVDDVLATVTAFDKDRGENGIVTYSIVSGNEESLFKIDAKSG 1537
Query: 780 TQKLFAAPVD 809
+L A P+D
Sbjct: 1538 EVRL-AKPLD 1546
>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
protein F25F2.2 protein.
Length = 4307
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +3
Query: 603 NSDYFVGHVVF-FPPKSVLSEELVAPVGACGFEVGDEVHVHHLLVVYNGEAVLNKTGPSF 779
NS YFVGH F F +S ++++A V A + G+ V + +V N E++ S
Sbjct: 1478 NSPYFVGHTAFAFVDESDTVDDVLATVTAFDKDRGENGIVTYSIVSGNEESLFKIDAKSG 1537
Query: 780 TQKLFAAPVD 809
+L A P+D
Sbjct: 1538 EVRL-AKPLD 1546
>AL031630-22|CAA20995.2| 454|Caenorhabditis elegans Hypothetical
protein Y38H6C.17 protein.
Length = 454
Score = 30.7 bits (66), Expect = 1.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 499 ELVYSLWMFMIGQPPPFLARLILYSLFMP 585
E + +W F+ G PPPF +++ F+P
Sbjct: 151 EHIIEIWQFIAGSPPPFSKIVLILMYFVP 179
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/63 (33%), Positives = 29/63 (46%)
Frame = -3
Query: 754 TASPL*TTKR*WTCTSSPTSNPHAPTGATSSSLNTLLGGKKTTCPTK*SELWSHPTWA*T 575
T +P TT T T++PT+ APT T++ T TT T + + PT T
Sbjct: 172 TTTPTTTTTTPTTTTTTPTTTTTAPTTTTTTPTTTTT--TPTTTTTVPTTTTTTPTTTTT 229
Query: 574 TNT 566
T T
Sbjct: 230 TTT 232
Score = 28.3 bits (60), Expect = 7.3
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = -3
Query: 754 TASPL*TTKR*WTCTSSPTSNPHAPTGATSSSLNTLLGGKKTTCPTK*SELWSHPTWA*T 575
T +P TT T T++PT+ PT T+ + T TT PT ++ + PT T
Sbjct: 221 TTTPTTTT----TTTTTPTTTTTTPTTTTTPATTT--SETTTTTPTTTTQTTTKPTTTTT 274
Query: 574 TNT 566
T T
Sbjct: 275 TPT 277
>AF067613-14|ABA54416.1| 395|Caenorhabditis elegans Hypothetical
protein F56D6.15 protein.
Length = 395
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -3
Query: 730 KR*WTCTSSPTSNPHA--PTGATSSSLNTLLGGKKT 629
K + C+ PT P A PT T++++N LGG++T
Sbjct: 113 KNYFVCSYDPTVQPKATTPTTTTAANVNCPLGGQQT 148
>AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical
protein K10E9.1 protein.
Length = 1451
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 199 FALTYHPKDYKFNELLKYVQQLSVNQQRTE 288
FAL Y + Y+FN++ K + Q+ +Q+ E
Sbjct: 363 FALKYPDRSYEFNKMYKKLYQIMEDQEEDE 392
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 27.9 bits (59), Expect = 9.7
Identities = 26/75 (34%), Positives = 36/75 (48%)
Frame = -3
Query: 811 SSTGAAKSFCVKLGPVLLRTASPL*TTKR*WTCTSSPTSNPHAPTGATSSSLNTLLGGKK 632
S++G S L + + T SP +T+ T TS P+S+P T + SSS T +
Sbjct: 1960 STSGTNPSSPRSLSQITI-TPSPSQSTES--TQTSLPSSSPSPSTHSVSSSEGTTMSSGA 2016
Query: 631 TTCPTK*SELWSHPT 587
TT K S L S T
Sbjct: 2017 TTSGDKMSFLSSTGT 2031
>U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical
protein F37A4.4 protein.
Length = 1163
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 481 FTNDSNELVYSLWMFMIGQPPPFLARLILYSLFMPT*DGSTILITS 618
FT++ +L+++ G+ + R YSLFM DG +LI S
Sbjct: 787 FTSNGRNQYINLYLYYFGKTSDYEKRW-RYSLFMDRVDGKNVLIDS 831
>AF039045-8|AAB94199.1| 300|Caenorhabditis elegans Hypothetical
protein F15E11.2 protein.
Length = 300
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 110 KGCFCKPMAGLSNGFSLNTTRLAKSCS 30
KG +C+P + + NG N+T L C+
Sbjct: 218 KGKYCEPASAVENGKVCNSTSLTDGCT 244
>AF039045-7|AAB94207.1| 333|Caenorhabditis elegans Hypothetical
protein F15E11.11 protein.
Length = 333
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 110 KGCFCKPMAGLSNGFSLNTTRLAKSCS 30
KG +C+P + + NG N+T L C+
Sbjct: 251 KGKYCEPASAVENGKVCNSTSLTDGCT 277
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,336,956
Number of Sequences: 27780
Number of extensions: 410517
Number of successful extensions: 1085
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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