Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12c02
(801 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 372 e-103
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 39 0.004
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 33 0.18
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 29 2.9
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 29 2.9
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 29 2.9
AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical... 29 3.9
AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical... 29 3.9
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 28 6.8
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 28 6.8
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 28 6.8
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 372 bits (915), Expect = e-103
Identities = 174/257 (67%), Positives = 205/257 (79%)
Frame = -1
Query: 780 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 601
RGPKKHLKRL AP WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL E
Sbjct: 2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61
Query: 600 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 421
KI+ QR+++VDGKVRT +P GFMDVV+IE+TNE FR++YD KGR+ +HRI EA +K
Sbjct: 62 KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121
Query: 420 LCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCM 241
LCKVK V T K VP L T DGRTIRYPDP +KVND+I +I+T KI D +KFE GNL
Sbjct: 122 LCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAY 181
Query: 240 ITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGK 61
+TGGRN+GRVG I RER PG+ DI+HIKDS GH+FATR++NVF+IGKG KA +SLP G
Sbjct: 182 VTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGA 241
Query: 60 GIRLTIAEERDKRIAAK 10
GIRL+IAEERDKR+A K
Sbjct: 242 GIRLSIAEERDKRMAQK 258
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 39.1 bits (87), Expect = 0.004
Identities = 22/65 (33%), Positives = 26/65 (40%)
Frame = -3
Query: 208 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 29
HHR E AH G HGTH H E H+ H G H + H P H G
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHHESHGHGHHSPAHHGHHG 459
Query: 28 QAHRS 14
+ H +
Sbjct: 460 EHHHA 464
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/56 (37%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = -3
Query: 208 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGHPPHH 44
HH E H H G HGTH H GH G H A A GH HH
Sbjct: 525 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHH 580
Score = 37.1 bits (82), Expect = 0.015
Identities = 23/70 (32%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Frame = -3
Query: 217 ACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGHPPHHR 41
A HH E H H G HGTH H GH G H A A GH H
Sbjct: 464 APAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGH--HGE 521
Query: 40 RGAGQAHRSQ 11
G H +
Sbjct: 522 HGTHHGHHGE 531
Score = 35.5 bits (78), Expect = 0.045
Identities = 28/115 (24%), Positives = 37/115 (32%), Gaps = 2/115 (1%)
Frame = -3
Query: 352 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VRELVYDHGRP*LGACG-HHRVPRETSR 179
HH + + + H P H ++ ++G H H G G HH P
Sbjct: 462 HHAPAHHGHHGEHHHAPAHHGHHGEHGTHH---GHHGSHHSPAHHGHHGEHHHAPAHHGH 518
Query: 178 LLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRS 14
H H HG H H H G G H H P H G+ H +
Sbjct: 519 ---HGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHA 570
Score = 35.1 bits (77), Expect = 0.059
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = -3
Query: 169 HCAHQGLHGTHLRHEVEQR-VHNRQGHEGVHLAAARQGHPPHHRRGAGQAH 20
H AH HG H RH E H+ H G H H HH A H
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH-GTHHGHHGEHHHAPAHHGH 441
Score = 35.1 bits (77), Expect = 0.059
Identities = 26/79 (32%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Frame = -3
Query: 238 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTH--LRHEVEQRVHNRQGHE-GVHLAAA 68
HG G+ G H T L H H G HGTH H H+ HE G H A
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAHHGAH 702
Query: 67 RQGHPP---HHRRGAGQAH 20
H HH G H
Sbjct: 703 HGHHDDKENHHHHGHHSKH 721
Score = 34.3 bits (75), Expect = 0.10
Identities = 27/115 (23%), Positives = 37/115 (32%), Gaps = 1/115 (0%)
Frame = -3
Query: 352 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VRELVYDHGRP*LGACGHHRVPRETSRL 176
HH + + + H P H ++ ++G H E + H G G H
Sbjct: 497 HHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGE--HHHAPAHHGHHGEHGTHHGHHGS 554
Query: 175 LRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQ 11
AH G HG H H G GVH + H H A H +
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVH-HGHHESHGHGHHAPAHHGHHGE 608
Score = 33.5 bits (73), Expect = 0.18
Identities = 30/117 (25%), Positives = 38/117 (32%), Gaps = 6/117 (5%)
Frame = -3
Query: 352 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*V-RELVYDHGRP*LGACGHH--RVPRET 185
HH + + + H P H ++ +G H V + HG GHH
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHG 614
Query: 184 SRLLRHCAHQGLHGTHLRHEVEQRVHNRQG--HEGVHLAAARQGHPPHHRRGAGQAH 20
+ AH G HG H H H G H G H GH H A H
Sbjct: 615 HHGAGYGAHHGHHGAHHHHAPHHEHHEHHGDHHHGSH--GVHHGHHGTHHSLAHHGH 669
Score = 33.5 bits (73), Expect = 0.18
Identities = 20/67 (29%), Positives = 20/67 (29%)
Frame = -3
Query: 208 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 29
HH P H G HG H H GH G H H P H G
Sbjct: 631 HHHAPHHEHHEHHGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAH-HGHH 689
Query: 28 QAHRSQG 8
AH G
Sbjct: 690 GAHHEHG 696
Score = 32.3 bits (70), Expect = 0.42
Identities = 22/71 (30%), Positives = 24/71 (33%), Gaps = 4/71 (5%)
Frame = -3
Query: 208 HHRVPRETSRLLRHCAHQGLHGT----HLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHR 41
HH E H H G HG+ H HE H+ H G H H HH
Sbjct: 560 HHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHH--GEHGVHHGHHG 617
Query: 40 RGAGQAHRSQG 8
G G H G
Sbjct: 618 AGYGAHHGHHG 628
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/67 (28%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Frame = -3
Query: 208 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQG-HPPHHRRGA 32
HH P H HG H H GH G H + A G H HH A
Sbjct: 461 HHHAPAHHGHHGEHHHAPAHHGHHGEH------GTHHGHHGSHHSPAHHGHHGEHHHAPA 514
Query: 31 GQAHRSQ 11
H +
Sbjct: 515 HHGHHGE 521
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/70 (27%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Frame = -3
Query: 211 GHHRVPRETSRLLRHCAHQGLH----GTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 44
G H P H H G H H HE H+ H G H H P H
Sbjct: 411 GTHHSPAHHGEHGTHHGHHGEHHHAPAHHGHHESHGHGHHSPAHHGHH---GEHHHAPAH 467
Query: 43 RRGAGQAHRS 14
G+ H +
Sbjct: 468 HGHHGEHHHA 477
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 33.5 bits (73), Expect = 0.18
Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Frame = -3
Query: 169 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGH--PPHHRRGAGQAHRSQG 8
HC G HG H R H G G R GH PPHH G++ G
Sbjct: 361 HCP--GRHGRHGSRSHSPRGHGHGGRHGPPHCPGRHGHHGPPHHHHHDGRSPSRHG 414
Score = 29.5 bits (63), Expect(2) = 0.57
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = -3
Query: 169 HC-AHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 44
HC G HG H + R +R GH H R PPHH
Sbjct: 389 HCPGRHGHHGPPHHHHHDGRSPSRHGHHHHHHHGCRP-FPPHH 430
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = -3
Query: 154 GLHGTHLRH-EVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGR 5
G HG H RH R GH G +R G P G H GR
Sbjct: 283 GRHGGHGRHGSCSGSPRGRHGHGGHGGHGSRSGSPGGRHGHGGSGHHRGGR 333
Score = 21.0 bits (42), Expect(2) = 0.57
Identities = 8/18 (44%), Positives = 8/18 (44%)
Frame = -3
Query: 55 PPHHRRGAGQAHRSQGRR 2
PPH R G H G R
Sbjct: 450 PPHRRGGHCHHHHHNGHR 467
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = -1
Query: 468 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 337
G+ + R+T E Y+ CK+++ A K VP Y+V H R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +3
Query: 21 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 140
C C PR C CR C +C C TRC T R C
Sbjct: 86 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 119
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +3
Query: 21 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 140
C C PR C CR C +C C TRC T R C
Sbjct: 84 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 117
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +3
Query: 21 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 140
C C PR C CR C +C C TRC T R C
Sbjct: 85 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 118
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +3
Query: 21 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 140
C C PR C CR C +C C TRC T R C
Sbjct: 86 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 119
>AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical
protein Y48B6A.13b protein.
Length = 377
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -3
Query: 250 LVYDHGRP*LGACGHHRVPRETSRLLRH 167
LV+D GR +G+ R RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234
>AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical
protein Y48B6A.13a protein.
Length = 326
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -3
Query: 250 LVYDHGRP*LGACGHHRVPRETSRLLRH 167
LV+D GR +G+ R RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +3
Query: 57 CPCRAAARCTPSCP-CRL*TRCS-TSWRRCVP 146
C C+ A C P CP + + CS T R C+P
Sbjct: 54 CSCQQAPICQPQCPRAEINSDCSATCVRACIP 85
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +3
Query: 21 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 140
C C P+ C CR C +C C TRC T R C
Sbjct: 85 CCCCRPKCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 118
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +2
Query: 311 ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 475
E ++ + G V P C Y PVA + H Y A + ++R N P T
Sbjct: 868 EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,313,259
Number of Sequences: 27780
Number of extensions: 476968
Number of successful extensions: 1508
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1473
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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