Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12b23
(240 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce... 89 1e-19
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch... 24 3.1
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 24 3.1
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 24 3.1
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 23 4.1
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos... 23 4.1
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 23 5.4
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 23 5.4
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 23 5.4
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb... 23 5.4
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 23 5.4
SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces pombe... 23 7.1
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 23 7.1
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 23 7.1
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 23 7.1
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 23 7.1
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 22 9.4
SPAC1556.04c |cdd1|pcd1|cytidine deaminase Ccd1|Schizosaccharomy... 22 9.4
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|... 22 9.4
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 22 9.4
>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 56
Score = 88.6 bits (210), Expect = 1e-19
Identities = 37/54 (68%), Positives = 42/54 (77%)
Frame = -3
Query: 163 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
M H N+W+SHPR+YG+GSR C R GLIRKYGLNI RQ FREYA+DIGF K
Sbjct: 1 MAHENVWFSHPRKYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVK 54
>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
Tim17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 164
Score = 23.8 bits (49), Expect = 3.1
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +3
Query: 102 HDRDPCPYL 128
H RDPCPY+
Sbjct: 6 HTRDPCPYV 14
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 23.8 bits (49), Expect = 3.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 107 PGSLSVSARVRIPNICVAHFKKLNCFSLTSNKLD 208
PGS S +I + VA ++ C S + N+LD
Sbjct: 186 PGSAMRSLGDKISSTIVAQSARVPCMSWSGNELD 219
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 23.8 bits (49), Expect = 3.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 121 GQGSRSCRSCSNRHGLIRKYGLNICRQC 38
G GS + N+ G + +GLNI RQC
Sbjct: 285 GAGSYHSFAIDNK-GRVYAWGLNITRQC 311
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 140 FSPSQIRTRIPVMPILLQQAWLNPQV 63
F PS I P + + L AWL+ Q+
Sbjct: 278 FRPSAIERNWPKIFVTLLSAWLSTQI 303
>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 209
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 30 SLKHCLHMFKPYLRIKP 80
S+K C PYL +KP
Sbjct: 54 SMKRCRETIAPYLELKP 70
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 69 RIKPCLLEQDRHDRDPCPYLRG*EYQI 149
R P LLE ++ D CP +G YQ+
Sbjct: 438 RSNPTLLEFMQYHIDHCPAEKGETYQL 464
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 23.0 bits (47), Expect = 5.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = +2
Query: 140 IPNICVAHFKKLNCFSLTSNKLD 208
+P +F K+ CF KLD
Sbjct: 680 VPGQAAVYFSKVACFCFEEQKLD 702
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 23.0 bits (47), Expect = 5.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = +2
Query: 140 IPNICVAHFKKLNCFSLTSNKLD 208
+P +F K+ CF KLD
Sbjct: 680 VPGQAAVYFSKVACFCFEEQKLD 702
>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 405
Score = 23.0 bits (47), Expect = 5.4
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -2
Query: 122 RTRIPVMPILLQQAW 78
+T + V+P LLQQ+W
Sbjct: 73 KTSVKVVPWLLQQSW 87
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1115
Score = 23.0 bits (47), Expect = 5.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 194 SLARNNLIS*NGPRKYLVFSPSQIRTRIPVMPILLQQAWLNP 69
SLAR +++ GP K L F + T V L + + ++P
Sbjct: 918 SLARVSVLRGEGPNKGLPFIDDYVATDDKVTDYLTEYSGIHP 959
>SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 139
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 71 PQVRFEHMQTVLQRV 27
PQ+RFEH + L+RV
Sbjct: 24 PQLRFEHTKGDLKRV 38
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 22.6 bits (46), Expect = 7.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 110 PVMPILLQQAWLNPQVRFEHMQ 45
P M +L QA NP EHM+
Sbjct: 550 PAMQAILGQARENPAALMEHMK 571
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 22.6 bits (46), Expect = 7.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -3
Query: 124 YGQGSRSCRSCSNRHGLIRKYGLNICRQCFRE 29
Y + S CRSC NR + Y + F+E
Sbjct: 1163 YKKDSYECRSCQNRTRFSQVYLPYAAKLLFQE 1194
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 137 RIPNICVAHFKKLNCFSLTSNKL 205
R PNI HFK+ S+K+
Sbjct: 324 RAPNILTIHFKRFTFNGFQSSKI 346
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 45 LHMFKPYLRIKPCLLEQ 95
LH+ KPYLR + EQ
Sbjct: 1039 LHLLKPYLRSASTIEEQ 1055
>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 82 HGLIRKYGLNICRQCFREYAHDIGFK 5
H RKY LNI R +E A + K
Sbjct: 31 HVFTRKYDLNINRDSLQELASFVSKK 56
>SPAC1556.04c |cdd1|pcd1|cytidine deaminase Ccd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 133
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 52 ICRQCFREYAHDI 14
ICRQ RE++ DI
Sbjct: 91 ICRQVIREFSKDI 103
>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 595
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 54 FKPYLRIKPCLLEQDRHDRDPC 119
F P+L + LLE D D D C
Sbjct: 511 FTPFLTVFSHLLEDDDLDADIC 532
>SPBC16C6.06 |pep1|vps10|sorting receptor for
CPY|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1466
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/33 (30%), Positives = 14/33 (42%)
Frame = -3
Query: 145 WYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNIC 47
WY+ RY GS C + RK ++C
Sbjct: 576 WYT---RYANGSPICSEMGKKEFFWRKKATSVC 605
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,058,138
Number of Sequences: 5004
Number of extensions: 19705
Number of successful extensions: 52
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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