Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12b23
(240 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ439060-15|CAD27766.1| 56|Anopheles gambiae putative ribosoma... 108 2e-26
U02964-1|AAA03444.1| 376|Anopheles gambiae actin 1D protein. 23 1.5
U02933-1|AAA56882.1| 376|Anopheles gambiae actin 1D protein. 23 1.5
U02930-1|AAA56881.1| 376|Anopheles gambiae actin 1D protein. 23 1.5
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein. 23 2.0
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein. 23 2.0
CR954256-1|CAJ14142.1| 376|Anopheles gambiae actin protein. 22 2.6
AY341174-1|AAR13738.1| 280|Anopheles gambiae fibrinogen protein. 22 3.4
AY341173-1|AAR13737.1| 280|Anopheles gambiae fibrinogen protein. 22 3.4
AY341172-1|AAR13736.1| 280|Anopheles gambiae fibrinogen protein. 22 3.4
AY341171-1|AAR13735.1| 280|Anopheles gambiae fibrinogen protein. 22 3.4
AY341170-1|AAR13734.1| 280|Anopheles gambiae fibrinogen protein. 22 3.4
AY341169-1|AAR13733.1| 280|Anopheles gambiae fibrinogen protein. 22 3.4
AY341168-1|AAR13732.1| 280|Anopheles gambiae fibrinogen protein. 22 3.4
AJ010299-1|CAA09070.1| 722|Anopheles gambiae stat protein. 22 3.4
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ... 21 4.5
AF457560-1|AAL68790.1| 56|Anopheles gambiae hypothetical prote... 21 4.5
Z22930-4|CAA80516.1| 267|Anopheles gambiae Trypsinogen precurso... 21 7.9
AY994094-1|AAX86007.1| 41|Anopheles gambiae metallothionein 2 ... 21 7.9
AF364132-1|AAL35508.1| 397|Anopheles gambiae putative odorant r... 21 7.9
>AJ439060-15|CAD27766.1| 56|Anopheles gambiae putative ribosomal
protein protein.
Length = 56
Score = 108 bits (260), Expect = 2e-26
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = -3
Query: 163 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
MG AN+WYSHPR+YGQGSR R+CSN HG+IRKYGLNICRQCFREYA DIGF+K
Sbjct: 1 MGFANLWYSHPRKYGQGSRFWRACSNNHGMIRKYGLNICRQCFREYAKDIGFRK 54
>U02964-1|AAA03444.1| 376|Anopheles gambiae actin 1D protein.
Length = 376
Score = 23.0 bits (47), Expect = 1.5
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 131 SQIRTRIPVMPILLQQAWLNPQVRFEHMQTVL 36
+++R P+LL +A LNP+ E M ++
Sbjct: 93 NELRVAPEEHPVLLTEAPLNPKANREKMTQIM 124
>U02933-1|AAA56882.1| 376|Anopheles gambiae actin 1D protein.
Length = 376
Score = 23.0 bits (47), Expect = 1.5
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 131 SQIRTRIPVMPILLQQAWLNPQVRFEHMQTVL 36
+++R P+LL +A LNP+ E M ++
Sbjct: 93 NELRVAPEEHPVLLTEAPLNPKANREKMTQIM 124
>U02930-1|AAA56881.1| 376|Anopheles gambiae actin 1D protein.
Length = 376
Score = 23.0 bits (47), Expect = 1.5
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 131 SQIRTRIPVMPILLQQAWLNPQVRFEHMQTVL 36
+++R P+LL +A LNP+ E M ++
Sbjct: 93 NELRVAPEEHPVLLTEAPLNPKANREKMTQIM 124
>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
Length = 3320
Score = 22.6 bits (46), Expect = 2.0
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = +1
Query: 97 IGMTGILVRICEGENTKYLRGPF 165
I G+L C G N+ Y+ P+
Sbjct: 3121 IEYNGLLTTACAGTNSSYMYTPY 3143
>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
Length = 3318
Score = 22.6 bits (46), Expect = 2.0
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = +1
Query: 97 IGMTGILVRICEGENTKYLRGPF 165
I G+L C G N+ Y+ P+
Sbjct: 3124 IEYNGLLTTACAGTNSSYMYTPY 3146
>CR954256-1|CAJ14142.1| 376|Anopheles gambiae actin protein.
Length = 376
Score = 22.2 bits (45), Expect = 2.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 131 SQIRTRIPVMPILLQQAWLNPQVRFEHMQTVL 36
+++R P+LL +A LNP+ E M ++
Sbjct: 93 NELRVAPEEHPVLLTEAPLNPKSNREKMTQIM 124
>AY341174-1|AAR13738.1| 280|Anopheles gambiae fibrinogen protein.
Length = 280
Score = 21.8 bits (44), Expect = 3.4
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -1
Query: 237 FVQVRHLEGVSNLLLVSEKQFNFLKWA 157
FV H EG+ EK F + WA
Sbjct: 14 FVMKEHSEGIGQNQAHLEKVFGSMLWA 40
>AY341173-1|AAR13737.1| 280|Anopheles gambiae fibrinogen protein.
Length = 280
Score = 21.8 bits (44), Expect = 3.4
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -1
Query: 237 FVQVRHLEGVSNLLLVSEKQFNFLKWA 157
FV H EG+ EK F + WA
Sbjct: 14 FVMKEHSEGIGQNQAHLEKVFGSMLWA 40
>AY341172-1|AAR13736.1| 280|Anopheles gambiae fibrinogen protein.
Length = 280
Score = 21.8 bits (44), Expect = 3.4
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -1
Query: 237 FVQVRHLEGVSNLLLVSEKQFNFLKWA 157
FV H EG+ EK F + WA
Sbjct: 14 FVMKEHSEGIGQNQAHLEKVFGSMLWA 40
>AY341171-1|AAR13735.1| 280|Anopheles gambiae fibrinogen protein.
Length = 280
Score = 21.8 bits (44), Expect = 3.4
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -1
Query: 237 FVQVRHLEGVSNLLLVSEKQFNFLKWA 157
FV H EG+ EK F + WA
Sbjct: 14 FVMKEHSEGIGQNQAHLEKVFGSMLWA 40
>AY341170-1|AAR13734.1| 280|Anopheles gambiae fibrinogen protein.
Length = 280
Score = 21.8 bits (44), Expect = 3.4
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -1
Query: 237 FVQVRHLEGVSNLLLVSEKQFNFLKWA 157
FV H EG+ EK F + WA
Sbjct: 14 FVMKEHSEGIGQNQAHLEKVFGSMLWA 40
>AY341169-1|AAR13733.1| 280|Anopheles gambiae fibrinogen protein.
Length = 280
Score = 21.8 bits (44), Expect = 3.4
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -1
Query: 237 FVQVRHLEGVSNLLLVSEKQFNFLKWA 157
FV H EG+ EK F + WA
Sbjct: 14 FVMKEHSEGIGQNQAHLEKVFGSMLWA 40
>AY341168-1|AAR13732.1| 280|Anopheles gambiae fibrinogen protein.
Length = 280
Score = 21.8 bits (44), Expect = 3.4
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -1
Query: 237 FVQVRHLEGVSNLLLVSEKQFNFLKWA 157
FV H EG+ EK F + WA
Sbjct: 14 FVMKEHSEGIGQNQAHLEKVFGSMLWA 40
>AJ010299-1|CAA09070.1| 722|Anopheles gambiae stat protein.
Length = 722
Score = 21.8 bits (44), Expect = 3.4
Identities = 6/16 (37%), Positives = 11/16 (68%)
Frame = +2
Query: 158 AHFKKLNCFSLTSNKL 205
+H+K++ C+SL L
Sbjct: 174 SHYKRIQCYSLKQRSL 189
>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
gambiae RT2 retroposon. ).
Length = 1222
Score = 21.4 bits (43), Expect = 4.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 109 RSCRSCSNRHGLIRKYGLNICRQCFREY 26
R+C HG++ + GL + Q REY
Sbjct: 146 RTCDRGEELHGMVEQLGLIVINQ-GREY 172
>AF457560-1|AAL68790.1| 56|Anopheles gambiae hypothetical protein
13 protein.
Length = 56
Score = 21.4 bits (43), Expect = 4.5
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Frame = -2
Query: 227 FAILKVYLICC--SLARNNLI 171
FA+L V L+CC S+ N +I
Sbjct: 6 FALLLVVLVCCLVSVQGNEII 26
>Z22930-4|CAA80516.1| 267|Anopheles gambiae Trypsinogen precursor
of ANTRYP7 protein.
Length = 267
Score = 20.6 bits (41), Expect = 7.9
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 89 GAGSA*PGSLSVSARVRI 142
GAG A PG V ARV I
Sbjct: 239 GAGCAQPGYPGVYARVAI 256
>AY994094-1|AAX86007.1| 41|Anopheles gambiae metallothionein 2
protein.
Length = 41
Score = 20.6 bits (41), Expect = 7.9
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = +1
Query: 46 CICSNRTCGLSHACWSR 96
C C++ CG C SR
Sbjct: 10 CKCTSPNCGAGCGCESR 26
>AF364132-1|AAL35508.1| 397|Anopheles gambiae putative odorant
receptor Or4 protein.
Length = 397
Score = 20.6 bits (41), Expect = 7.9
Identities = 9/29 (31%), Positives = 13/29 (44%)
Frame = -3
Query: 157 HANIWYSHPRRYGQGSRSCRSCSNRHGLI 71
+A WY++P + R S RH I
Sbjct: 333 YATRWYNYPIAFRSSIRMMLRQSQRHAHI 361
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 274,221
Number of Sequences: 2352
Number of extensions: 6201
Number of successful extensions: 22
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 53
effective length of database: 439,323
effective search space used: 11422398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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