Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12b23
(240 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U14973-1|AAA85661.1| 56|Homo sapiens ribosomal protein S29 pro... 104 4e-23
L31610-1|AAB27426.1| 56|Homo sapiens protein ( Homo sapiens (c... 104 4e-23
BC035313-1|AAH35313.1| 56|Homo sapiens ribosomal protein S29 p... 104 4e-23
BC032813-1|AAH32813.1| 56|Homo sapiens ribosomal protein S29 p... 104 4e-23
AB061847-1|BAB79485.1| 56|Homo sapiens ribosomal protein S29 p... 104 4e-23
AB007165-1|BAA25827.1| 26|Homo sapiens ribosomal protein S29 p... 54 1e-07
BC047704-1|AAH47704.1| 183|Homo sapiens SPATA3 protein protein. 29 3.5
AY032925-1|AAK54455.1| 183|Homo sapiens testis and spermatogene... 29 3.5
AK093385-1|BAC04149.1| 192|Homo sapiens protein ( Homo sapiens ... 29 3.5
AY273896-1|AAP33047.2| 724|Homo sapiens OATP-H protein. 27 8.0
>U14973-1|AAA85661.1| 56|Homo sapiens ribosomal protein S29
protein.
Length = 56
Score = 104 bits (250), Expect = 4e-23
Identities = 42/54 (77%), Positives = 49/54 (90%)
Frame = -3
Query: 163 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
MGH +++SHPR++GQGSRSCR CSNRHGLIRKYGLN+CRQCFR+YA DIGF K
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54
>L31610-1|AAB27426.1| 56|Homo sapiens protein ( Homo sapiens
(clone cori-1cl5) S29 ribosomal protein mRNA, complete
cds. ).
Length = 56
Score = 104 bits (250), Expect = 4e-23
Identities = 42/54 (77%), Positives = 49/54 (90%)
Frame = -3
Query: 163 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
MGH +++SHPR++GQGSRSCR CSNRHGLIRKYGLN+CRQCFR+YA DIGF K
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54
>BC035313-1|AAH35313.1| 56|Homo sapiens ribosomal protein S29
protein.
Length = 56
Score = 104 bits (250), Expect = 4e-23
Identities = 42/54 (77%), Positives = 49/54 (90%)
Frame = -3
Query: 163 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
MGH +++SHPR++GQGSRSCR CSNRHGLIRKYGLN+CRQCFR+YA DIGF K
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54
>BC032813-1|AAH32813.1| 56|Homo sapiens ribosomal protein S29
protein.
Length = 56
Score = 104 bits (250), Expect = 4e-23
Identities = 42/54 (77%), Positives = 49/54 (90%)
Frame = -3
Query: 163 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
MGH +++SHPR++GQGSRSCR CSNRHGLIRKYGLN+CRQCFR+YA DIGF K
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54
>AB061847-1|BAB79485.1| 56|Homo sapiens ribosomal protein S29
protein.
Length = 56
Score = 104 bits (250), Expect = 4e-23
Identities = 42/54 (77%), Positives = 49/54 (90%)
Frame = -3
Query: 163 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 2
MGH +++SHPR++GQGSRSCR CSNRHGLIRKYGLN+CRQCFR+YA DIGF K
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54
>AB007165-1|BAA25827.1| 26|Homo sapiens ribosomal protein S29
protein.
Length = 26
Score = 53.6 bits (123), Expect = 1e-07
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = -3
Query: 79 GLIRKYGLNICRQCFREYAHDIGFKK 2
GLIRKYGLN+CRQCFR+YA DIGF K
Sbjct: 1 GLIRKYGLNMCRQCFRQYAKDIGFIK 26
>BC047704-1|AAH47704.1| 183|Homo sapiens SPATA3 protein protein.
Length = 183
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 52 CSNRTCGLSHACWSRIGM 105
CS TC S ACW R+G+
Sbjct: 102 CSCATCPCSSACWRRLGL 119
>AY032925-1|AAK54455.1| 183|Homo sapiens testis and spermatogenesis
cell apoptosis related protein 1 protein.
Length = 183
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 52 CSNRTCGLSHACWSRIGM 105
CS TC S ACW R+G+
Sbjct: 102 CSCATCPCSSACWRRLGL 119
>AK093385-1|BAC04149.1| 192|Homo sapiens protein ( Homo sapiens
cDNA FLJ36066 fis, clone TESTI2019257. ).
Length = 192
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 52 CSNRTCGLSHACWSRIGM 105
CS TC S ACW R+G+
Sbjct: 111 CSCATCPCSSACWRRLGL 128
>AY273896-1|AAP33047.2| 724|Homo sapiens OATP-H protein.
Length = 724
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +1
Query: 28 TL*STVCICSNRTCGLSHACW--SRIGMTGILVRIC 129
T+ ST + CG+ ACW I M +LV IC
Sbjct: 637 TIDSTCILWDINDCGIKGACWIYDNIKMAHMLVAIC 672
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,469,849
Number of Sequences: 237096
Number of extensions: 785401
Number of successful extensions: 1831
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1831
length of database: 76,859,062
effective HSP length: 58
effective length of database: 63,107,494
effective search space used: 1325257374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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