Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12b20
(834 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 317 8e-87
03_01_0547 + 4093196-4093657,4094267-4095148 317 8e-87
03_01_0544 + 4082528-4082989,4083585-4084466 317 8e-87
03_01_0543 + 4076981-4077442,4078145-4079026 317 8e-87
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 84 2e-16
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 77 1e-14
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 77 1e-14
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 71 2e-12
02_03_0105 - 15254959-15255216,15256235-15256299,15257080-152572... 70 3e-12
02_04_0462 + 23131433-23132836 63 3e-10
03_06_0699 - 35612919-35612989,35613079-35613319,35613506-356135... 60 3e-09
08_02_1414 + 26901937-26902597,26903361-26903397,26903733-269037... 31 1.1
04_04_0511 - 25800371-25800454,25800563-25800629,25800903-258010... 29 3.5
11_06_0516 + 24502645-24504507 29 4.6
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 29 6.0
03_05_0824 + 27980191-27980243,27980633-27980671,27980974-279820... 29 6.0
07_03_0634 + 20125242-20125688 28 8.0
06_03_1165 - 28106604-28106915 28 8.0
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 28 8.0
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 317 bits (778), Expect = 8e-87
Identities = 143/192 (74%), Positives = 169/192 (88%)
Frame = -3
Query: 832 LQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 653
LQDVYKIGGIGTVPVGRVETGVLKPG +V F P+ +TTEVKSVEMHHEALQEA+PGDNVG
Sbjct: 238 LQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVG 297
Query: 652 FNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 473
FNVKNV+VK+L+RGYVA +SK++P K AA FT+QVI++NHPGQI NGY PVLDCHT+HIA
Sbjct: 298 FNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA 357
Query: 472 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 293
KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDM
Sbjct: 358 VKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDM 417
Query: 292 RQTVAVGVIKAV 257
RQTVAVGVIK V
Sbjct: 418 RQTVAVGVIKNV 429
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 317 bits (778), Expect = 8e-87
Identities = 143/192 (74%), Positives = 169/192 (88%)
Frame = -3
Query: 832 LQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 653
LQDVYKIGGIGTVPVGRVETGVLKPG +V F P+ +TTEVKSVEMHHEALQEA+PGDNVG
Sbjct: 238 LQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVG 297
Query: 652 FNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 473
FNVKNV+VK+L+RGYVA +SK++P K AA FT+QVI++NHPGQI NGY PVLDCHT+HIA
Sbjct: 298 FNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA 357
Query: 472 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 293
KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDM
Sbjct: 358 VKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDM 417
Query: 292 RQTVAVGVIKAV 257
RQTVAVGVIK V
Sbjct: 418 RQTVAVGVIKNV 429
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 317 bits (778), Expect = 8e-87
Identities = 143/192 (74%), Positives = 169/192 (88%)
Frame = -3
Query: 832 LQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 653
LQDVYKIGGIGTVPVGRVETGVLKPG +V F P+ +TTEVKSVEMHHEALQEA+PGDNVG
Sbjct: 238 LQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVG 297
Query: 652 FNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 473
FNVKNV+VK+L+RGYVA +SK++P K AA FT+QVI++NHPGQI NGY PVLDCHT+HIA
Sbjct: 298 FNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA 357
Query: 472 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 293
KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDM
Sbjct: 358 VKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDM 417
Query: 292 RQTVAVGVIKAV 257
RQTVAVGVIK V
Sbjct: 418 RQTVAVGVIKNV 429
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 317 bits (778), Expect = 8e-87
Identities = 143/192 (74%), Positives = 169/192 (88%)
Frame = -3
Query: 832 LQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 653
LQDVYKIGGIGTVPVGRVETGVLKPG +V F P+ +TTEVKSVEMHHEALQEA+PGDNVG
Sbjct: 238 LQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVG 297
Query: 652 FNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 473
FNVKNV+VK+L+RGYVA +SK++P K AA FT+QVI++NHPGQI NGY PVLDCHT+HIA
Sbjct: 298 FNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA 357
Query: 472 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 293
KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRFAVRDM
Sbjct: 358 VKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDM 417
Query: 292 RQTVAVGVIKAV 257
RQTVAVGVIK V
Sbjct: 418 RQTVAVGVIKNV 429
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 83.8 bits (198), Expect = 2e-16
Identities = 47/185 (25%), Positives = 90/185 (48%), Gaps = 9/185 (4%)
Frame = -3
Query: 826 DVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFN 647
D YK +GTV +G++E+G ++ G ++ P +V + + ++ A P +NV
Sbjct: 234 DKYK--DMGTVVMGKIESGTIREGDSLLVMPNKTNVKVIGISLDEHKVRRAGPAENVRVK 291
Query: 646 VKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN--HPGQISNGYTPVLDCHTAHIA 473
+ + +++ G+V S NP +F AQ+ +L + GY VL H+
Sbjct: 292 LSGIEDEDIMAGFVL-SSIGNPVGAVTEFNAQLQILELLDNAIFTAGYKAVLHIHSVVEE 350
Query: 472 CKFAEIKEKVDRRTGKSTEVNPKS-------IKSGDAAIVNLVPSKPLCVESFQEFPPLG 314
C+ ++ E++D + K + K +K+G + + + +C+E+F +FP LG
Sbjct: 351 CEIVDLIEEIDMKKKKEADPKKKKPKRKPLFVKNGAVVVCRIQVNNLICIENFSDFPQLG 410
Query: 313 RFAVR 299
RF +R
Sbjct: 411 RFTLR 415
>04_04_1015 - 30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 77.4 bits (182), Expect = 1e-14
Identities = 56/191 (29%), Positives = 92/191 (48%), Gaps = 4/191 (2%)
Frame = -3
Query: 826 DVYKIGGIGTVPV-GRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGF 650
DV K G G++ETG ++ G+ V+ +P VKS+E + A GDNV
Sbjct: 486 DVIKSQSTGQFAAFGKLETGAIRIGSKVLISPCGEVAAVKSIERDSNSCDIARAGDNVAV 545
Query: 649 NVKNVSVKELRRGYVAGDSKNNP--PKGAADFTA-QVIVLNHPGQISNGYTPVLDCHTAH 479
+++ + +L + G NP P ++F +V+VL+ I GY H
Sbjct: 546 SLQGIDGSKL----ILGGILCNPGFPVPVSNFLELRVLVLDVTIPILIGYQVEFHIHHVK 601
Query: 478 IACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 299
A + +I +D+ GK ++ P+ +KS A+V + P+CV+ F + LGR +R
Sbjct: 602 EAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRAFLR 660
Query: 298 DMRQTVAVGVI 266
T+AVGV+
Sbjct: 661 SSGSTIAVGVV 671
>04_04_1008 - 30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 77.4 bits (182), Expect = 1e-14
Identities = 56/191 (29%), Positives = 92/191 (48%), Gaps = 4/191 (2%)
Frame = -3
Query: 826 DVYKIGGIGTVPV-GRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGF 650
DV K G G++ETG ++ G+ V+ +P VKS+E + A GDNV
Sbjct: 486 DVIKSQSTGQFAAFGKLETGAIRIGSKVLISPCGEVAAVKSIERDSNSCDIARAGDNVAV 545
Query: 649 NVKNVSVKELRRGYVAGDSKNNP--PKGAADFTA-QVIVLNHPGQISNGYTPVLDCHTAH 479
+++ + +L + G NP P ++F +V+VL+ I GY H
Sbjct: 546 SLQGIDGSKL----ILGGILCNPGFPVPVSNFLELRVLVLDVTIPILIGYQVEFHIHHVK 601
Query: 478 IACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 299
A + +I +D+ GK ++ P+ +KS A+V + P+CV+ F + LGR +R
Sbjct: 602 EAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRAFLR 660
Query: 298 DMRQTVAVGVI 266
T+AVGV+
Sbjct: 661 SSGSTIAVGVV 671
>04_04_1593 - 34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 70.5 bits (165), Expect = 2e-12
Identities = 47/191 (24%), Positives = 89/191 (46%), Gaps = 1/191 (0%)
Frame = -3
Query: 826 DVYKIGGIGTVPVG-RVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGF 650
DV+ +G V +G +VE G + G+ ++ P VK++E + + A GDNV
Sbjct: 470 DVFSSHKLGQVAIGGKVEVGATRSGSKILVMPFGELAVVKTIERNSSSCNLARAGDNVAI 529
Query: 649 NVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIAC 470
++ + + G V + P A+ +++VL+ I G ++
Sbjct: 530 GLQGIDPSHIMPGGVICHP-DYPVSVASCLELKILVLDITVPILVGL---------QVSA 579
Query: 469 KFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMR 290
+I ++++TGK+++ P+ + S A++ + K +CVE F LGR +R
Sbjct: 580 SMVKILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLRSQG 639
Query: 289 QTVAVGVIKAV 257
T+AVG++ V
Sbjct: 640 NTIAVGIVSRV 650
>02_03_0105 -
15254959-15255216,15256235-15256299,15257080-15257215,
15257314-15257419,15257642-15257792,15258817-15258881,
15258980-15259134,15259219-15259281,15259846-15259917,
15260364-15260408
Length = 371
Score = 69.7 bits (163), Expect = 3e-12
Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 2/146 (1%)
Frame = -3
Query: 826 DVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFN 647
D YK +GTV +G++E+G + G ++ P +V SV + ++ A PG+NV
Sbjct: 189 DKYK--DMGTVVMGKIESGTISEGDNMLVMPNKANVKVISVHCDEDRVRSAAPGENVRVK 246
Query: 646 VKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN--HPGQISNGYTPVLDCHTAHIA 473
+ + ++ G+V K NP ++F AQ+ +L + GY VL H+
Sbjct: 247 LSGIEEDDITAGFVLSSIK-NPVSAISEFRAQLQILELLDNAIFTAGYKAVLHIHSVVEE 305
Query: 472 CKFAEIKEKVDRRTGKSTEVNPKSIK 395
C+ E+ E++D + K ++ K K
Sbjct: 306 CEIVELIEEIDLKRRKEGDIKKKKSK 331
>02_04_0462 + 23131433-23132836
Length = 467
Score = 62.9 bits (146), Expect = 3e-10
Identities = 53/197 (26%), Positives = 81/197 (41%), Gaps = 5/197 (2%)
Frame = -3
Query: 832 LQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTE--VKSVEMHHEALQEAVPGDN 659
++DV+ I G GTV GR+E G +K G V T V VEM + + +A+ GDN
Sbjct: 283 VEDVFSITGRGTVATGRIERGTVKVGDTVDIVGIRETRNCTVTGVEMFQKTMDDAMAGDN 342
Query: 658 VGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQIS---NGYTPVLDCH 488
VG ++ + ++ RG V + P D V+ + G+ S GY P
Sbjct: 343 VGLLLRGMQKDDIERGMVLAKPASITPHTKFDAVVYVLKKDEGGRHSPFFPGYRPQFYMR 402
Query: 487 TAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 308
T + +I D K GD + + +P+ E RF
Sbjct: 403 TTDVTGNVTKIMNDKDEEA--------KMCMPGDRVKMVVELIQPVACEQGM------RF 448
Query: 307 AVRDMRQTVAVGVIKAV 257
A+R+ +TV GVI +
Sbjct: 449 AIREGGKTVGAGVINTI 465
>03_06_0699 -
35612919-35612989,35613079-35613319,35613506-35613568,
35613644-35613709,35614110-35614193,35614685-35614890,
35614977-35615067,35615176-35615280,35615552-35615626,
35615728-35615820,35615914-35615989,35616115-35616305
Length = 453
Score = 59.7 bits (138), Expect = 3e-09
Identities = 56/196 (28%), Positives = 87/196 (44%), Gaps = 4/196 (2%)
Frame = -3
Query: 832 LQDVYKIGGIGTVPVGRVETGVLKPG---TIVVFAPAN-ITTEVKSVEMHHEALQEAVPG 665
++DV+ I G GTV GRVE G +K G I+ P+ + T V VEM + L G
Sbjct: 272 IEDVFSIQGRGTVVTGRVEQGTIKTGEDVEILGLTPSGPLKTTVTGVEMFKKILDHGEAG 331
Query: 664 DNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHT 485
DNVG ++ + +++RG V K K F A++ VL +T L ++
Sbjct: 332 DNVGLLLRGLKRGDVQRGQVV--CKPGTVKTYQKFEAEIYVLTK--DEGGRHTAFLSNYS 387
Query: 484 AHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFA 305
+ A++ KV G + ++ +G L+ PL P RFA
Sbjct: 388 PQFYFRTADVTGKVVLPDGVEMVMPGDNVTAG----FELISPVPL--------EPGQRFA 435
Query: 304 VRDMRQTVAVGVIKAV 257
+R+ +TV GV+ V
Sbjct: 436 LREGGRTVGAGVVSKV 451
>08_02_1414 +
26901937-26902597,26903361-26903397,26903733-26903791,
26904198-26904388,26904591-26904680,26904833-26904926,
26905008-26905159,26905250-26905347,26905400-26905459,
26905460-26905598,26905686-26905784,26905883-26906018,
26906352-26906413
Length = 625
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Frame = -3
Query: 790 VGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRG 611
+G + + P TIV +P T KSVE +E L A G ++G + +
Sbjct: 252 LGTISMDKVTPSTIVGPSPVAGITVDKSVEFSYEELSNATQGFSIGNKIGQGGFGAVYYA 311
Query: 610 YVAGDS---KNNPPKGAADFTAQVIVLNH 533
+ G+ K + +F A++ VL H
Sbjct: 312 ELRGEKAAIKKMDMQATHEFLAELKVLTH 340
>04_04_0511 -
25800371-25800454,25800563-25800629,25800903-25801000,
25801094-25801152,25801247-25801379,25801461-25801532,
25801628-25801678,25802000-25802111,25802231-25802604
Length = 349
Score = 29.5 bits (63), Expect = 3.5
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Frame = -3
Query: 745 VFAPANITTEVKSVEMHHEAL-QEAVPGDNVGFNV-KNVSVKELRRGYVAGDSKNNPPKG 572
+F P+ + SV +H + E + GDN ++ +N + + G V + N P G
Sbjct: 34 LFVPSGTMANLISVLVHCDTRGSEVILGDNSHIHIYENGGISTI--GGVHPKTVRNNPDG 91
Query: 571 AADFTAQVIVLNHP-GQISNGYTPVLDCHTAHIAC 470
D V+ + HP G + T ++ H C
Sbjct: 92 TMDIDKIVVAIRHPDGALYYPTTRLICLENTHANC 126
>11_06_0516 + 24502645-24504507
Length = 620
Score = 29.1 bits (62), Expect = 4.6
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = -3
Query: 706 VEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPG 527
VE HEAL AV D V S++E+ R GD + PP + V++ G
Sbjct: 114 VEQVHEALL-AVDAD---IEVIKASIREVYRFPCDGDERRGPPPPSTAPATGVVMTRRMG 169
Query: 526 QISNG 512
+I G
Sbjct: 170 EIRRG 174
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 47 NYKIMLHYKPCKKYRKGMSL*P-FFPSK 127
N M PCKK +KGM++ P FF SK
Sbjct: 657 NVNKMSKLNPCKKQKKGMNILPKFFTSK 684
>03_05_0824 +
27980191-27980243,27980633-27980671,27980974-27982023,
27983097-27983262,27983439-27983549,27983637-27983688,
27984691-27984859,27985604-27985883
Length = 639
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 541 LNHPGQISNGYTPVLDCHTAHIACKFAEIKE-KVDRRTGKSTEVNPKSI 398
L+ P +ISNG TPV D ++ C+ K D + + +EV+ S+
Sbjct: 271 LHRPRRISNGTTPVFDDNSGSHLCQDVSSKSFSADDQCLQDSEVDKDSV 319
>07_03_0634 + 20125242-20125688
Length = 148
Score = 28.3 bits (60), Expect = 8.0
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Frame = +3
Query: 156 CMKNCAVNS-SSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNS 332
C + A S S++ + A ++A T PP ++LT + L R P G
Sbjct: 35 CANSVAYLSLSAFVMSGRAVASAAATASPPVGVQLTVTSEHSEWSILSPRKTCHPTGKVK 94
Query: 333 WKDSTHRGLE---GTKLTMAASPDLMDFGLTSVDLP 431
WK +E GT P+ G +V LP
Sbjct: 95 WKGRREHFVERLVGTAHLPRRRPERQPQGSGAVPLP 130
>06_03_1165 - 28106604-28106915
Length = 103
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2
Query: 716 SQVCGDAPRSSPRSCTWRQCRFQRKERVRQGIASWLCCW 600
SQ G A SSP + R R +R E + A L CW
Sbjct: 62 SQTGGAAASSSPAAACGRAARSKRSEEEKMQKAYHLVCW 100
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.3 bits (60), Expect = 8.0
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +3
Query: 216 AALVTLPPPASLKLT-ALMTPTATVCLMSRTAKRPRGGNSWKDSTHRGLEGTKLTMAASP 392
A + L PA + A+ P TV + T ++ RG K +GL G KLT S
Sbjct: 266 ALIYPLVSPAVVSCDIAIAYPMPTVNPVESTPRKGRGRPRKKPVEIKGLSGIKLTEDLST 325
Query: 393 DLMDFGLTSVDLPVRR 440
L LT ++ +R
Sbjct: 326 ALSPIALTCMEPKKKR 341
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,070,034
Number of Sequences: 37544
Number of extensions: 504026
Number of successful extensions: 1600
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1593
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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