Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12b20
(834 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 329 2e-90
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 329 2e-90
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 329 2e-90
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 100 1e-21
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 59 4e-09
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 54 1e-07
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 53 3e-07
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 53 3e-07
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 52 4e-07
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 52 4e-07
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 52 4e-07
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 39 0.004
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 38 0.012
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 38 0.012
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 31 0.77
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 31 0.77
Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical pr... 31 1.0
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 30 2.3
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 30 2.3
Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical pr... 29 4.1
AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical... 29 4.1
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 7.2
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 7.2
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 7.2
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 329 bits (808), Expect = 2e-90
Identities = 152/192 (79%), Positives = 169/192 (88%)
Frame = -3
Query: 832 LQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 653
LQDVYKIGGIGTVPVGRVETG++KPG +V FAP N+TTEVKSVEMHHE+L EAVPGDNVG
Sbjct: 216 LQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVG 275
Query: 652 FNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 473
FNVKNVSVK++RRG V DSK +P K A F AQVI++NHPGQISNGYTPVLDCHTAHIA
Sbjct: 276 FNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIA 335
Query: 472 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 293
CKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDM
Sbjct: 336 CKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDM 395
Query: 292 RQTVAVGVIKAV 257
RQTVAVGVIK+V
Sbjct: 396 RQTVAVGVIKSV 407
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 329 bits (808), Expect = 2e-90
Identities = 152/192 (79%), Positives = 169/192 (88%)
Frame = -3
Query: 832 LQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 653
LQDVYKIGGIGTVPVGRVETG++KPG +V FAP N+TTEVKSVEMHHE+L EAVPGDNVG
Sbjct: 250 LQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVG 309
Query: 652 FNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 473
FNVKNVSVK++RRG V DSK +P K A F AQVI++NHPGQISNGYTPVLDCHTAHIA
Sbjct: 310 FNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIA 369
Query: 472 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 293
CKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDM
Sbjct: 370 CKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDM 429
Query: 292 RQTVAVGVIKAV 257
RQTVAVGVIK+V
Sbjct: 430 RQTVAVGVIKSV 441
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 329 bits (808), Expect = 2e-90
Identities = 152/192 (79%), Positives = 169/192 (88%)
Frame = -3
Query: 832 LQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 653
LQDVYKIGGIGTVPVGRVETG++KPG +V FAP N+TTEVKSVEMHHE+L EAVPGDNVG
Sbjct: 250 LQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVG 309
Query: 652 FNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 473
FNVKNVSVK++RRG V DSK +P K A F AQVI++NHPGQISNGYTPVLDCHTAHIA
Sbjct: 310 FNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIA 369
Query: 472 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 293
CKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDM
Sbjct: 370 CKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDM 429
Query: 292 RQTVAVGVIKAV 257
RQTVAVGVIK+V
Sbjct: 430 RQTVAVGVIKSV 441
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 100 bits (240), Expect = 1e-21
Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 1/188 (0%)
Frame = -3
Query: 817 KIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 638
K +GTV +G++E+G ++ G +V P +V + + V GDN+ F +K
Sbjct: 347 KYSEMGTVIIGKMESGCVQKGDTLVVMPNKQPVQVLQIWADDVETERVVAGDNIKFKLKG 406
Query: 637 VSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAE 458
+ EL+ G++ S ++ K F A+V+VL H I++GY+ VL +A
Sbjct: 407 IEENELQGGFII-CSPDSLAKTGRVFDAEVLVLEHRSIIASGYSCVLHIQSAVEEVTVKG 465
Query: 457 IKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVA 278
+ +D++TG+ K +K + I+ L +P +E F+E+P LGRF +RD +T+A
Sbjct: 466 VIATIDKKTGEKKRA--KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIA 523
Query: 277 VG-VIKAV 257
+G V+K V
Sbjct: 524 IGKVLKVV 531
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 58.8 bits (136), Expect = 4e-09
Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 4/150 (2%)
Frame = -3
Query: 832 LQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN----ITTEVKSVEMHHEALQEAVPG 665
+ D+Y + G+GT+ G + +G ++ I++ P + + +KS+ + G
Sbjct: 377 IDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRMPVGIVKCG 436
Query: 664 DNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHT 485
+ F +K + K++R+G V D K P F A+++VL+HP I Y +L +
Sbjct: 437 QSASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLHHPTTIKPNYQAMLHIGS 495
Query: 484 AHIACKFAEIKEKVDRRTGKSTEVNPKSIK 395
+ ++V RTG +V K I+
Sbjct: 496 VRQTATLVSMGKEV-LRTGDRDKVQFKFIR 524
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 54.4 bits (125), Expect = 1e-07
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Frame = -3
Query: 832 LQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPAN----ITTEVKSVEMHHEALQEAVPG 665
+ D+Y + G+GT+ G + +G ++ I++ P + + +KS+ + G
Sbjct: 378 IDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRCLVGIVKCG 437
Query: 664 DNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVL 497
+ F +K + K++R+G V D K P F A+++VL+HP I Y +L
Sbjct: 438 QSASFALKKIPKKDVRQGMVLVDPKVKPVASMV-FEAEILVLHHPTTIKPNYQAML 492
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 52.8 bits (121), Expect = 3e-07
Identities = 37/193 (19%), Positives = 82/193 (42%), Gaps = 1/193 (0%)
Frame = -3
Query: 832 LQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 653
+ DV K+ V G++E+G ++ V+ +++T +++ + GD +
Sbjct: 397 ISDVLKVASNQLVVSGKIESGEVEKDD-KVYIMSSVTAATVKECANNDGSRHCFAGDYIL 455
Query: 652 FNVKNVSVKE-LRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHI 476
++ E ++ G V + + + F +++ I G L H+ +
Sbjct: 456 LTLQGTFEPESIQTGSVVVRAGPDTLIPSKKFEVRLVAFEIAMPIIKGAKAELYAHSLCV 515
Query: 475 ACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 296
C F + +++ G+ + P+ I G +A+V + + +E+F LGR R
Sbjct: 516 PCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRA 575
Query: 295 MRQTVAVGVIKAV 257
T+A G+++ V
Sbjct: 576 GGNTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 52.8 bits (121), Expect = 3e-07
Identities = 37/193 (19%), Positives = 82/193 (42%), Gaps = 1/193 (0%)
Frame = -3
Query: 832 LQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 653
+ DV K+ V G++E+G ++ V+ +++T +++ + GD +
Sbjct: 415 ISDVLKVASNQLVVSGKIESGEVEKDD-KVYIMSSVTAATVKECANNDGSRHCFAGDYIL 473
Query: 652 FNVKNVSVKE-LRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHI 476
++ E ++ G V + + + F +++ I G L H+ +
Sbjct: 474 LTLQGTFEPESIQTGSVVVRAGPDTLIPSKKFEVRLVAFEIAMPIIKGAKAELYAHSLCV 533
Query: 475 ACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 296
C F + +++ G+ + P+ I G +A+V + + +E+F LGR R
Sbjct: 534 PCTFTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVTFRA 593
Query: 295 MRQTVAVGVIKAV 257
T+A G+++ V
Sbjct: 594 GGNTIAAGIVEKV 606
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 52.4 bits (120), Expect = 4e-07
Identities = 54/197 (27%), Positives = 87/197 (44%), Gaps = 6/197 (3%)
Frame = -3
Query: 829 QDVYKIGGIGTVPVGRVETGVLKPGT-IVVFAPANITTEVKSV----EMHHEALQEAVPG 665
+ VY I G GTV G++E G+LK G I + T VKSV E + + +A PG
Sbjct: 257 EHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPG 316
Query: 664 DNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHT 485
D +G ++ + K++RRG V + + K AQ+ VL TP+ + +
Sbjct: 317 DQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLKE--SEGGAKTPIANYFS 373
Query: 484 AHIACKFAEIKEKVDRRTGKSTEVNPKS-IKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 308
H+ + +G S + K + G++A V L + + +E P RF
Sbjct: 374 EHVF--------SLTWDSGASVRIIGKDFVMPGESAEVELSLNSQMFIE------PQQRF 419
Query: 307 AVRDMRQTVAVGVIKAV 257
+R +T+ GV V
Sbjct: 420 TIRKGAKTIGTGVFTDV 436
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 52.4 bits (120), Expect = 4e-07
Identities = 54/197 (27%), Positives = 87/197 (44%), Gaps = 6/197 (3%)
Frame = -3
Query: 829 QDVYKIGGIGTVPVGRVETGVLKPGT-IVVFAPANITTEVKSV----EMHHEALQEAVPG 665
+ VY I G GTV G++E G+LK G I + T VKSV E + + +A PG
Sbjct: 258 EHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPG 317
Query: 664 DNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHT 485
D +G ++ + K++RRG V + + K AQ+ VL TP+ + +
Sbjct: 318 DQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLKE--SEGGAKTPIANYFS 374
Query: 484 AHIACKFAEIKEKVDRRTGKSTEVNPKS-IKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 308
H+ + +G S + K + G++A V L + + +E P RF
Sbjct: 375 EHVF--------SLTWDSGASVRIIGKDFVMPGESAEVELSLNSQMFIE------PQQRF 420
Query: 307 AVRDMRQTVAVGVIKAV 257
+R +T+ GV V
Sbjct: 421 TIRKGAKTIGTGVFTDV 437
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 52.4 bits (120), Expect = 4e-07
Identities = 54/197 (27%), Positives = 87/197 (44%), Gaps = 6/197 (3%)
Frame = -3
Query: 829 QDVYKIGGIGTVPVGRVETGVLKPGT-IVVFAPANITTEVKSV----EMHHEALQEAVPG 665
+ VY I G GTV G++E G+LK G I + T VKSV E + + +A PG
Sbjct: 258 EHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAEPG 317
Query: 664 DNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHT 485
D +G ++ + K++RRG V + + K AQ+ VL TP+ + +
Sbjct: 318 DQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLKE--SEGGAKTPIANYFS 374
Query: 484 AHIACKFAEIKEKVDRRTGKSTEVNPKS-IKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 308
H+ + +G S + K + G++A V L + + +E P RF
Sbjct: 375 EHVF--------SLTWDSGASVRIIGKDFVMPGESAEVELSLNSQMFIE------PQQRF 420
Query: 307 AVRDMRQTVAVGVIKAV 257
+R +T+ GV V
Sbjct: 421 TIRKGAKTIGTGVFTDV 437
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 39.1 bits (87), Expect = 0.004
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Frame = -3
Query: 832 LQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITT----EVKSVEMHHEALQEAVPG 665
++++Y + +G V G + G L G V+ P T V S+ +A+ PG
Sbjct: 407 IEELYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRSRQAVGCVNPG 466
Query: 664 DNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 533
+ ++ LRRG V + + PP +FTA +++L H
Sbjct: 467 EAASISLNLPDGVSLRRGMVLAEIDHQPPV-CYEFTANLLLLCH 509
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 37.5 bits (83), Expect = 0.012
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = -3
Query: 814 IGGIGTVPVGRVETGVLKPGTIVVFA--PANITTEVKSVEMHHEALQEAVPGDNVGFNVK 641
I G GTV VG +E GVLK G V + T +++ ++++E GD+ G +
Sbjct: 250 ITGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGDHCGVLCR 309
Query: 640 NVSVKELRRGYVAG 599
V ++RG AG
Sbjct: 310 GVKGDTVKRGMWAG 323
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 37.5 bits (83), Expect = 0.012
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = -3
Query: 814 IGGIGTVPVGRVETGVLKPGTIVVFA--PANITTEVKSVEMHHEALQEAVPGDNVGFNVK 641
I G GTV VG +E GVLK G V + T +++ ++++E GD+ G +
Sbjct: 250 ITGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGDHCGVLCR 309
Query: 640 NVSVKELRRGYVAG 599
V ++RG AG
Sbjct: 310 GVKGDTVKRGMWAG 323
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 31.5 bits (68), Expect = 0.77
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = -3
Query: 820 YKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNV 644
+ I G GTV G V GVL+ T + F N VK++E + + + G F V
Sbjct: 210 FAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGARAAFLV 268
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 31.5 bits (68), Expect = 0.77
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = -3
Query: 820 YKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNV 644
+ I G GTV G V GVL+ T + F N VK++E + + + G F V
Sbjct: 169 FAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGARAAFLV 227
>Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical
protein F35C5.4 protein.
Length = 172
Score = 31.1 bits (67), Expect = 1.0
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Frame = +3
Query: 540 STMT*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPG-TASWRASWCISTDLT 716
ST T A+ + P ++ P + FT +S + S R S +S D T
Sbjct: 4 STATVAIIQSEPSTSSSSSPSSSRPEDGATVGNTFTQSSAVSESQSTSERTSRSVSPDST 63
Query: 717 SVVMLAGAKTTMVPGFN--TPVSTLPTGTVPIPPILY 821
V + + VP + VST PT +PPI Y
Sbjct: 64 PVRVTTSTLLSTVPTSQDISGVSTAPTTKATLPPITY 100
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 29.9 bits (64), Expect = 2.3
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Frame = +3
Query: 531 GWLSTMT*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTASWRASW---CI 701
G ST T A S AP GGLF + T P + T F T +P T
Sbjct: 446 GASSTTTPA--STAPTGGLFGAATTTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAAT 503
Query: 702 STDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIP 809
+T + L +T+ + P +T T T+P P
Sbjct: 504 TTTPATAATLGQTPSTVSATPSLPTTTSTTSTLPKP 539
Score = 28.7 bits (61), Expect = 5.4
Identities = 23/81 (28%), Positives = 32/81 (39%)
Frame = +3
Query: 549 T*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVVM 728
T A +AAP GGLF + T P T F T +P TA+ + T +
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAATLGQTPSTVSATPSLP 527
Query: 729 LAGAKTTMVPGFNTPVSTLPT 791
+ T+ +P P PT
Sbjct: 528 TTTSTTSTLP---KPAEATPT 545
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -3
Query: 763 KPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 638
KPGTI F P ITTE K H L+ + GD +++
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGDMTSRGIRS 397
>Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical
protein F57B1.9a protein.
Length = 357
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +3
Query: 141 MKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLM 296
M Y +C ++N Y L ++A+V LPPP ++ + ++ A C++
Sbjct: 188 MMYNNCRYRYSLNVLHY--ELYCQTSAVVNLPPPKAISIMEIVIQFAIPCII 237
>Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical
protein T23G5.3 protein.
Length = 262
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +3
Query: 195 LPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 347
+P+V + L PPP L +LM P TV + R K P G NS K T
Sbjct: 129 VPIVPRNLLLSKPPPPPPPPLPSLMQPKDTVQIPMR--KPPTGRNSKKIKT 177
>AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical
protein Y75B8A.33 protein.
Length = 341
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -2
Query: 116 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 9
KR NS++F I+ C + F Y++ + +C
Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 499 LDCHTAHIACKFAEIKEKVDRRTGKSTE 416
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 499 LDCHTAHIACKFAEIKEKVDRRTGKSTE 416
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 499 LDCHTAHIACKFAEIKEKVDRRTGKSTE 416
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,603,246
Number of Sequences: 27780
Number of extensions: 432013
Number of successful extensions: 1326
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1318
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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