Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12b20
(834 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 380 e-108
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 371 e-105
EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor 1-a... 233 2e-63
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 164 1e-42
X16709-1|CAA34681.1| 162|Apis mellifera phospholipase A-2 protein. 24 1.5
EF373554-1|ABQ28728.1| 167|Apis mellifera phospholipase A2 prot... 24 1.5
AF438408-1|AAL30844.1| 167|Apis mellifera phospholipase A2 prot... 24 1.5
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 23 2.6
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 23 3.5
L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein pro... 22 8.0
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 22 8.0
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 22 8.0
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 380 bits (936), Expect = e-108
Identities = 179/194 (92%), Positives = 185/194 (95%)
Frame = -3
Query: 832 LQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 653
LQDVYKIGGIGTVPVGRVETGVLKPG +V FAPA +TTEVKSVEMHHEALQEAVPGDNVG
Sbjct: 250 LQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVG 309
Query: 652 FNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 473
FNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA
Sbjct: 310 FNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 369
Query: 472 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 293
CKFA+IKEK DRR GK+TE NPKSIKSGDAAIV LVPSKP+C E+FQEFPPLGRFAVRDM
Sbjct: 370 CKFADIKEKCDRRNGKTTEENPKSIKSGDAAIVMLVPSKPMCAEAFQEFPPLGRFAVRDM 429
Query: 292 RQTVAVGVIKAVNF 251
RQTVAVGVIKAV F
Sbjct: 430 RQTVAVGVIKAVTF 443
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 371 bits (913), Expect = e-105
Identities = 173/194 (89%), Positives = 184/194 (94%)
Frame = -3
Query: 832 LQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 653
LQDVYKIGGIGTVPVGRVETG+LKPG +V FAPA +TTEVKSVEMHHEAL EA+PGDNVG
Sbjct: 250 LQDVYKIGGIGTVPVGRVETGILKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDNVG 309
Query: 652 FNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 473
FNVKN+SVKELRRGYVAGDSKN PP+GAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA
Sbjct: 310 FNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIA 369
Query: 472 CKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 293
CKFAEIKEK DRRTGK+TE NPKSIKSGDAAIV L P+KP+CVE+FQEFPPLGRFAVRDM
Sbjct: 370 CKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDM 429
Query: 292 RQTVAVGVIKAVNF 251
RQTVAVGVIK+V F
Sbjct: 430 RQTVAVGVIKSVTF 443
Score = 21.8 bits (44), Expect = 8.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 660 LSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFN 767
L PG A ++T++ SV M A T +PG N
Sbjct: 272 LKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDN 307
>EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor
1-alpha protein.
Length = 119
Score = 233 bits (569), Expect = 2e-63
Identities = 108/119 (90%), Positives = 113/119 (94%)
Frame = -3
Query: 712 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 533
KSVEMHHEAL EA+PGDNVGFNVKN+SVKELRRGYVAGDSKN PP+GAADFTAQVIVLNH
Sbjct: 1 KSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNH 60
Query: 532 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSK 356
PGQISNGYTPVLDCHTAHIACKFAEIKEK DRRTGK+TE NPKSIKSGDAAIV L P+K
Sbjct: 61 PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTK 119
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 164 bits (398), Expect = 1e-42
Identities = 77/82 (93%), Positives = 79/82 (96%)
Frame = -3
Query: 832 LQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVG 653
LQDVYKIGGIGTVPVGRVETGVLKPG +V FAPA +TTEVKSVEMHHEALQEAVPGDNVG
Sbjct: 193 LQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVG 252
Query: 652 FNVKNVSVKELRRGYVAGDSKN 587
FNVKNVSVKELRRGYVAGDSKN
Sbjct: 253 FNVKNVSVKELRRGYVAGDSKN 274
>X16709-1|CAA34681.1| 162|Apis mellifera phospholipase A-2 protein.
Length = 162
Score = 24.2 bits (50), Expect = 1.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 144 KYRSCMKNCAVNSSSYFLPLVAFS 215
K+ C+KN A SSYF+ + F+
Sbjct: 94 KFYDCLKNSADTISSYFVGKMYFN 117
>EF373554-1|ABQ28728.1| 167|Apis mellifera phospholipase A2
protein.
Length = 167
Score = 24.2 bits (50), Expect = 1.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 144 KYRSCMKNCAVNSSSYFLPLVAFS 215
K+ C+KN A SSYF+ + F+
Sbjct: 99 KFYDCLKNSADTISSYFVGKMYFN 122
>AF438408-1|AAL30844.1| 167|Apis mellifera phospholipase A2
protein.
Length = 167
Score = 24.2 bits (50), Expect = 1.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 144 KYRSCMKNCAVNSSSYFLPLVAFS 215
K+ C+KN A SSYF+ + F+
Sbjct: 99 KFYDCLKNSADTISSYFVGKMYFN 122
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 23.4 bits (48), Expect = 2.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 105 CSPFFLRNTFR*MKYRSCMKN 167
C FF R+ + ++YR C KN
Sbjct: 87 CKGFFRRSIQQKIQYRPCTKN 107
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 23.0 bits (47), Expect = 3.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 634 SVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPG 527
S ++LR ++A + + PKG Q++VLN G
Sbjct: 283 STRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAG 318
>L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein
protein.
Length = 74
Score = 21.8 bits (44), Expect = 8.0
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = -2
Query: 515 RLHTSLGLPHCPHC 474
RLHT HC HC
Sbjct: 30 RLHTGEKPYHCSHC 43
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 21.8 bits (44), Expect = 8.0
Identities = 18/63 (28%), Positives = 24/63 (38%)
Frame = +2
Query: 431 STTVNFFFDFCKFAGNVGSVAIQDWCVTV*DLTRMVKHNDLSCKICSTLRWVVFGVTSNI 610
ST+ N F K G G + CVT R HN + + C V + N+
Sbjct: 77 STSENKTFPTIKIVGYKGRALVVVSCVTKDQPYRPHPHNLVGKEACKQGVCTVEVSSENM 136
Query: 611 TTT 619
T T
Sbjct: 137 TVT 139
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 21.8 bits (44), Expect = 8.0
Identities = 18/63 (28%), Positives = 24/63 (38%)
Frame = +2
Query: 431 STTVNFFFDFCKFAGNVGSVAIQDWCVTV*DLTRMVKHNDLSCKICSTLRWVVFGVTSNI 610
ST+ N F K G G + CVT R HN + + C V + N+
Sbjct: 77 STSENKTFPTIKIVGYKGRALVVVSCVTKDQPYRPHPHNLVGKEACKQGVCTVEVSSENM 136
Query: 611 TTT 619
T T
Sbjct: 137 TVT 139
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,037
Number of Sequences: 438
Number of extensions: 4995
Number of successful extensions: 19
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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