Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12b18
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.06c |isd11||iron sulfur cluster assembly protein Isd11|...    29   0.22 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   1.5  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    26   2.0  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    26   2.0  
SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   4.7  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    25   6.2  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.2  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    24   8.2  

>SPBC13G1.06c |isd11||iron sulfur cluster assembly protein
           Isd11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 102

 Score = 29.5 bits (63), Expect = 0.22
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = -3

Query: 308 LYGKILRTLQKMPETSVYRKYTEQIVRERAAVLTQTKDSFEIEKKINCGQAEELIIQAEN 129
           LY  IL+T +  P T  YR+YT +  R++   L    D  + E+ I   +    IIQ ++
Sbjct: 11  LYRNILKTSKLFPYT--YREYTIRRTRDKFKELKVESDPAKFEQGIKDSEKLLEIIQRQS 68

Query: 128 ELN 120
            +N
Sbjct: 69  IIN 71


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
 Frame = -3

Query: 329 PHHTLGALYGKILRTLQKMPETSVYRKY-----TEQIVRERAAVLTQTKDSFEIEKKINC 165
           P + +  LY   L     +   S +  Y       +++  +  VL+        +K+  C
Sbjct: 357 PKNNIAKLYDPRLHLFFSLRHNSFFESYFIYFFLAKLILLKKTVLSLASTEQANKKQKTC 416

Query: 164 GQAEELIIQAE 132
            Q EEL++QAE
Sbjct: 417 SQIEELLLQAE 427


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 323 HTLGALYGKILRTLQKMPETSV 258
           HT  A Y  I++TLQ +P T V
Sbjct: 276 HTNAATYRVIIQTLQNLPHTKV 297


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 257 YRKYTEQIVRERAAVLTQTKDSFEIEKKINCGQAEELIIQAENEL 123
           Y ++ ++IV+ER      +K   +   K+N G A  L  Q EN+L
Sbjct: 433 YEEHRQKIVKERLEKQRASKIRSQNRPKVNAGLASRLSYQ-ENKL 476


>SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 135

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 363 NRSNRIGSRRKSASHFGRPIW 301
           NRSN    R+K+  H   P+W
Sbjct: 113 NRSNLKRKRKKTVQHNAHPLW 133


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 95  KPWEPLMAKPPKGQWEWPPSKA 30
           KP  P++ +   G W++PPS +
Sbjct: 106 KPLNPILGETFTGFWKFPPSNS 127


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = -3

Query: 311 ALYGKILRTLQKMPETSVYRKYTEQIVRERAAVLTQTKDSFEIEKKINCGQAEELIIQAE 132
           ALY K L+  + + E S   + + + +       T+   SF+  K++     EE IIQ +
Sbjct: 346 ALYEKFLKACKDLEEVSKSYEESREEIEALHETFTEEVTSFQSTKRLK----EEKIIQEK 401

Query: 131 NELN 120
           + ++
Sbjct: 402 SRVD 405


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 268 SGIFWRVRKILPYRAPKV*CGFAATANPVRPVVFFNKPIICF 393
           SG    ++K   Y  PK     A  A+ + P+VF N PII F
Sbjct: 626 SGASNNLQKYHRYLPPKQ----AVIASVISPIVFGNVPIIMF 663


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,565,834
Number of Sequences: 5004
Number of extensions: 28211
Number of successful extensions: 63
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)