Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12b18
(418 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68493-1|CAA92789.1| 150|Caenorhabditis elegans Hypothetical pr... 108 1e-24
AC006744-2|AAF60505.2| 503|Caenorhabditis elegans Cytochrome p4... 33 0.11
U28929-5|AAA68348.2| 438|Caenorhabditis elegans Gaba/glycine re... 30 0.78
Z82076-7|CAB04933.2| 291|Caenorhabditis elegans Hypothetical pr... 28 2.4
AF022985-15|AAB69969.2| 435|Caenorhabditis elegans Hypothetical... 27 5.5
U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore co... 27 7.2
AF324489-1|AAK49910.1| 351|Caenorhabditis elegans F44C8.7-like ... 26 9.5
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 26 9.5
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 26 9.5
AF016438-4|AAB65894.2| 351|Caenorhabditis elegans Hypothetical ... 26 9.5
>Z68493-1|CAA92789.1| 150|Caenorhabditis elegans Hypothetical
protein C33A12.1 protein.
Length = 150
Score = 108 bits (260), Expect = 1e-24
Identities = 47/100 (47%), Positives = 67/100 (67%)
Frame = -3
Query: 341 VAANPHHTLGALYGKILRTLQKMPETSVYRKYTEQIVRERAAVLTQTKDSFEIEKKINCG 162
V +PH L +YG+ILR L+++P + YRKYTE +V++R A++ D ++E+KI G
Sbjct: 50 VNEHPHRALTVVYGRILRALEQIPRDAAYRKYTEAVVKQRLALVQAENDIKKLEEKIGMG 109
Query: 161 QAEELIIQAENELNLARKMLNWKPWEPLMAKPPKGQWEWP 42
Q EE+I QAE EL R +++ K WEPL+ PKGQW WP
Sbjct: 110 QIEEVIEQAEYELETTRAIVDSKAWEPLVESAPKGQWSWP 149
>AC006744-2|AAF60505.2| 503|Caenorhabditis elegans Cytochrome p450
family protein 29A3 protein.
Length = 503
Score = 32.7 bits (71), Expect = 0.11
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = -3
Query: 338 AANPHHTLGALYGKILRTLQKMPETSVYRKYTEQIVRERAAVLTQTKDSFEIEKKINCGQ 159
A NPHH + A+Y + +K ++ + +T ++ ER ++S E+EK+ +
Sbjct: 224 AMNPHHQIPAIYWALGHQKKKDEYFNIMKTFTRNVIAERRT----ARESGEVEKETSKRN 279
Query: 158 AEELIIQAENE 126
L I NE
Sbjct: 280 MNFLDILLSNE 290
>U28929-5|AAA68348.2| 438|Caenorhabditis elegans Gaba/glycine
receptor family (seegbr) protein 3 protein.
Length = 438
Score = 29.9 bits (64), Expect = 0.78
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -3
Query: 194 SFEIEKKINCGQAEELIIQAENELNLARKMLNWKPWEPLMAKPPK 60
SFE+ + Q L+ ++ + N+A LNW+ W P+ PP+
Sbjct: 161 SFELSRFPIDAQECHLVFESYS-YNIAEVRLNWQQWAPVTMPPPE 204
>Z82076-7|CAB04933.2| 291|Caenorhabditis elegans Hypothetical
protein W07G1.1 protein.
Length = 291
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = -2
Query: 372 KKDNRSNRI--GSRRKS-ASHFGRPIW*NLTYSPKNARNI 262
KKD + + SRRKS A H G+P W +L+ KN ++
Sbjct: 249 KKDEKKRKSVSSSRRKSQAQHHGQPNWGDLSSFTKNIESL 288
>AF022985-15|AAB69969.2| 435|Caenorhabditis elegans Hypothetical
protein T15B7.16 protein.
Length = 435
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 152 ELIIQAENELNLARKMLNWKPWEPLMA 72
ELII++ N A+ LNW+ W+P+ +
Sbjct: 175 ELIIESY-AYNAAKVKLNWREWQPVFS 200
>U50193-3|AAP68918.1| 1189|Caenorhabditis elegans Nuclear pore complex
protein protein10, isoform b protein.
Length = 1189
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 323 HTLGALYGKILRTLQKMPETSVYRKYTEQI 234
H LY RT+ K ET ++R Y+ Q+
Sbjct: 935 HVWSLLYSVGYRTMSKTSETRLHRNYSSQL 964
>AF324489-1|AAK49910.1| 351|Caenorhabditis elegans F44C8.7-like
protein protein.
Length = 351
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = -3
Query: 341 VAANPHHTLGALYGKILRTLQKMPETSVYRKYTEQIVRERAAVLTQTKDSFEIEKKI 171
+A HHT + ++ T +P TSV+ +++ VL +TK + KK+
Sbjct: 37 IAVTAHHTAMPFFVQMANTSHFLPTTSVFMMEVLKLLFCLIIVLFKTKSFEKTGKKL 93
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 372 KKDNRSNRIGSRRKSASHFGRPIW*NLTYSPKNARN 265
K+DN ++ +KS+ H R + +SP N RN
Sbjct: 707 KRDNTKDQHRGGKKSSHHHSRETKHRIGWSPSNYRN 742
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 372 KKDNRSNRIGSRRKSASHFGRPIW*NLTYSPKNARN 265
K+DN ++ +KS+ H R + +SP N RN
Sbjct: 929 KRDNTKDQHRGGKKSSHHHSRETKHRIGWSPSNYRN 964
>AF016438-4|AAB65894.2| 351|Caenorhabditis elegans Hypothetical
protein F44C8.7 protein.
Length = 351
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = -3
Query: 341 VAANPHHTLGALYGKILRTLQKMPETSVYRKYTEQIVRERAAVLTQTKDSFEIEKKI 171
+A HHT + ++ T +P TSV+ +++ VL +TK + KK+
Sbjct: 37 IAVTAHHTAMPFFVQMANTSHFLPTTSVFMMEVLKLLFCLIIVLFKTKSFEKTGKKL 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,648,736
Number of Sequences: 27780
Number of extensions: 158207
Number of successful extensions: 375
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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