Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12b15
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 27 1.7
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||... 27 1.7
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2... 26 4.0
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ... 26 4.0
SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|ch... 26 5.3
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 25 7.0
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 7.0
SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr ... 25 9.3
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 25 9.3
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 25 9.3
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 27.5 bits (58), Expect = 1.7
Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Frame = -1
Query: 623 TLNRTDVMDLYNIKYAIDPTNKIVIEQV---DXVDAFVHILEPGQEVFDETXXRYHQ-FP 456
T N+ + DLYN A+ TN+ +I Q+ + +D+ + +LE ++
Sbjct: 262 TFNQQN-QDLYNQTEALKSTNEELINQIKSAEELDSAIQVLEERYRTMQRDEVKFQSAMS 320
Query: 455 GVVSSI-IFTQLVLNTIISVLSEDGSLLXLKLENTCFNFHVCNK 327
G+ S + T L+ +++ ++ L LK + + V N+
Sbjct: 321 GMKSKMESRTNLMKQLQVNIEEKESQLQLLKEKRDSLKYQVENQ 364
>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 27.5 bits (58), Expect = 1.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 194 FRQHDETSSQPKLAFRRQKLEIQCAV 271
F+ HDE ++ P L +R+ K I C +
Sbjct: 47 FQCHDELNTHPFLPWRKAKFHIPCVI 72
>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 73 CNCRTIKLNGMRSSKKIKRQ 14
C C T+K NG+++ +KI RQ
Sbjct: 127 CMCCTVKDNGIKALEKIMRQ 146
>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 282
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -1
Query: 635 FASYTLNRTDVMDLYNIKYAIDPTNKIVIEQ 543
F T + D M YN K + DPT+ ++ ++
Sbjct: 80 FLEATASEKDAMSYYNSKLSEDPTHTVIYKR 110
>SPBC16H5.04 |||pho88 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 190
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = +1
Query: 256 DPMRSFCFVSLFTIAAGKLPNTXRLLHTWKLKQVFSSFNXSKLPSSLKTLIIVFNTSCVK 435
+P +S+F + ++ + R W L+ ++++ N LP + +L I+ + + +K
Sbjct: 11 NPQTKSIGISIFLMMITRVIDFSRPSLLWPLRILYATINEFNLPWFIYSLTIL-DLTVLK 69
Query: 436 IIELTTP 456
+E TP
Sbjct: 70 YVEPATP 76
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 25.4 bits (53), Expect = 7.0
Identities = 18/73 (24%), Positives = 34/73 (46%)
Frame = +1
Query: 280 VSLFTIAAGKLPNTXRLLHTWKLKQVFSSFNXSKLPSSLKTLIIVFNTSCVKIIELTTPG 459
VSLF AA ++ R+ W+L +FS + + +I + + ++II +T
Sbjct: 442 VSLFADAAVEIFKLARIRVWWELGIIFSIATCTMMFGLETGIIFGLSITVMQIIRHSTRS 501
Query: 460 NWWYRXXVSSNTS 498
+R S+ T+
Sbjct: 502 RIMFRSPTSNGTA 514
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 7.0
Identities = 18/64 (28%), Positives = 27/64 (42%)
Frame = -1
Query: 395 SEDGSLLXLKLENTCFNFHVCNKRFVFGNLPAAIVNNETKQKLRIGSPIFAGEKLVSVVT 216
+ED L L + F+F C + + P+ + K I PI EKL V+T
Sbjct: 1080 NEDSRLKFLSTQRPAFSFGPCGTIVMAFSTPSGLYTTSGKGTKFIAGPIKI-EKLGDVLT 1138
Query: 215 TFHR 204
+R
Sbjct: 1139 DEYR 1142
>SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 238
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Frame = +3
Query: 282 FIIHDCRWQIAK------HKXFIAHVEIKTSVFEFQ 371
F+I C W I + FI H + VFEFQ
Sbjct: 182 FLITSCNWTIQELEERFTKNGFIVHSTVPVPVFEFQ 217
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 596 LYNIKYAIDPTNKIVIEQV 540
LYNI+YA+ PT +I I ++
Sbjct: 622 LYNIQYAMLPTKRISIRKL 640
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 990
Score = 25.0 bits (52), Expect = 9.3
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = -1
Query: 614 RTDVMDLYNIKYAIDPTNKIVIEQVDXVDAFVHILEPGQEVFDETXXRYHQFPGVVSSII 435
+TD++D I N +VI + +F++ ++ E++ + P + ++
Sbjct: 782 QTDIIDKVLIDMCSSIQNSVVIINEE---SFMNNIDITVELYHFFSIILQKHPSFLETMY 838
Query: 434 --FTQLVLNTIISVLSEDGSLL 375
FTQL+LN I++L + LL
Sbjct: 839 PDFTQLILNRAINLLGKPERLL 860
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,382
Number of Sequences: 5004
Number of extensions: 52646
Number of successful extensions: 156
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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