Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12b15
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634... 32 0.34
08_01_0077 + 546473-546512,546739-547013,547772-547885,548002-55... 31 1.0
05_07_0089 - 27619053-27620138 30 1.4
12_02_0235 + 16079042-16079410 29 2.4
02_01_0690 - 5152224-5152386,5152490-5152687,5152815-5153014,515... 29 2.4
12_01_0730 + 6505759-6508806 29 3.1
12_01_0714 + 6223269-6226250 29 3.1
08_01_0612 + 5378190-5378251,5378926-5379244,5379381-5379671,538... 29 4.1
01_06_0078 + 26223797-26223803,26224000-26224278,26224391-262246... 29 4.1
05_04_0045 - 17477470-17477570,17477753-17477774,17477942-174780... 28 5.5
12_01_0969 - 9765114-9765664,9767963-9768512,9769507-9769561,976... 28 7.2
03_05_0613 + 26124714-26124857,26125692-26126330,26126455-261266... 27 9.6
03_04_0163 + 17865529-17865801,17866030-17866102,17866251-17866270 27 9.6
01_05_0204 + 19246633-19246938,19247091-19247192,19247314-192474... 27 9.6
01_01_0601 - 4476261-4476728 27 9.6
>03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,
6349369-6349475,6349608-6349733,6349809-6349890,
6350057-6350130,6351184-6352631,6353391-6353540,
6353664-6353906,6354009-6354266,6355554-6356015
Length = 1130
Score = 32.3 bits (70), Expect = 0.34
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = +1
Query: 271 FCFVSLFTIAAGKLPNTXRLLHTWKLKQVFSSFNXSKLPSSLKTLIIVFNTSCVKI 438
FC T + K P+ +HTWKLK FS K S LK L V ++S + +
Sbjct: 1072 FCSNGSITNSQSKQPDEIYTVHTWKLKW-FSEETVVKFISLLKALYSVSSSSSLPV 1126
>08_01_0077 +
546473-546512,546739-547013,547772-547885,548002-550245
Length = 890
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 587 IKYAIDPTNKIVIEQVDXVDAFVHILEPG 501
+ +I+ NKI I D VD +H+LE G
Sbjct: 621 LNLSINDNNKIAIANADAVDPLIHVLETG 649
>05_07_0089 - 27619053-27620138
Length = 361
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -3
Query: 237 KASFGCDDVSSCWRKRMAATGDGNSRSVSAVGTHKGAERRPC 112
+A F C S+C ++ T N+ V+ +G KG PC
Sbjct: 24 RALFSCGIFSTCTHPALSPTATPNNNVVAGMGGAKGGSGTPC 65
>12_02_0235 + 16079042-16079410
Length = 122
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -3
Query: 243 RRKASFGCDDVSSCWRKRMAATGDGNSRSVSAVGTHKGAERR 118
+RKA G D + MAA +G S V +G H+ AERR
Sbjct: 40 QRKAGTGGDGSE---KTMMAARAEGGSNWVEVIGCHEKAERR 78
>02_01_0690 -
5152224-5152386,5152490-5152687,5152815-5153014,
5153122-5153223,5153414-5153550,5153688-5153798,
5156092-5156344,5157954-5158052,5158449-5158739
Length = 517
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 164 EFPSPVAAIRFRQHDETSSQPKLAFRRQKLEIQCAVFALFH 286
E PS A RF+QH S P FR+ +EI+ ++ H
Sbjct: 301 ELPSTFKAFRFQQH-RWSCGPANLFRKMLMEIKVTIWKKIH 340
>12_01_0730 + 6505759-6508806
Length = 1015
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = -1
Query: 467 HQFPGVVSSIIFTQLVLNTIISVLSE--DGSLLXLKLENTCFNFHVCNKRFVFGNLPAAI 294
++F G IIF L TI + G+L + + N + N F G +P +I
Sbjct: 300 NKFQGSFPPIIFQHKKLRTINLSKNPGISGNLPNFSQDTSLENLFLNNTNFT-GTIPGSI 358
Query: 293 VNNETKQKLRIGSPIFAG 240
+N + +KL +G+ F+G
Sbjct: 359 INLISVKKLDLGASGFSG 376
>12_01_0714 + 6223269-6226250
Length = 993
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = -1
Query: 467 HQFPGVVSSIIFTQLVLNTIISVLSE--DGSLLXLKLENTCFNFHVCNKRFVFGNLPAAI 294
++F G IIF L TI + G+L + + N + N F G +P +I
Sbjct: 278 NKFQGSFPPIIFQHKKLRTINLSKNPGISGNLPNFSQDTSLENLFLNNTNFT-GTIPGSI 336
Query: 293 VNNETKQKLRIGSPIFAG 240
+N + +KL +G+ F+G
Sbjct: 337 INLISVKKLDLGASGFSG 354
>08_01_0612 +
5378190-5378251,5378926-5379244,5379381-5379671,
5380520-5380768,5380843-5380967,5381487-5381585,
5381668-5382352
Length = 609
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 158 ASRLSGHIKVPNGVRVEKLRPNMSVYGTVQLPYDKI 51
AS + G K ++ + L+PN+ VYGT+ Y K+
Sbjct: 400 ASDMDGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKL 435
>01_06_0078 +
26223797-26223803,26224000-26224278,26224391-26224609,
26226846-26226917,26228073-26228221,26228859-26229135,
26230922-26231187
Length = 422
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = -1
Query: 257 SPIFAGEKLVSVVTTFHRVGENEWLLPVTGIQEASRLSGHIKVPNGVRVEKLRPNMSVYG 78
SP F E+ V V T H E W + G+ L+GH N + PN +++G
Sbjct: 131 SPDFYRERGVHVRDTVHLDMEMNWFRDLLGLLCPDDLAGHNLFEN--EENFINPNRTIHG 188
Query: 77 T 75
T
Sbjct: 189 T 189
>05_04_0045 -
17477470-17477570,17477753-17477774,17477942-17478017,
17478288-17478397,17478674-17478743,17478847-17479178
Length = 236
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 237 KASFG-CDDVSSCWRKRMAATGDGNSRSVSAVG 142
KAS+ DD S W R+AA + +S S SA G
Sbjct: 66 KASWSVADDEESRWLDRLAADAESSSSSASAAG 98
>12_01_0969 -
9765114-9765664,9767963-9768512,9769507-9769561,
9769918-9769980,9770547-9771325
Length = 665
Score = 27.9 bits (59), Expect = 7.2
Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 7/112 (6%)
Frame = -1
Query: 443 SIIFTQLVLNTIISVLSEDGSLLXLKLENTCFNFHVCNKRFVFGNLPAAIVNNE------ 282
SI TQ NT + + G + L TC + +K + + P + +N
Sbjct: 524 SICLTQKSSNTTFLLTNVYGPMEDATLMQTCSSQTTTSKHSLH-HAPDMLFSNHCPLLLS 582
Query: 281 -TKQKLRIGSPIFAGEKLVSVVTTFHRVGENEWLLPVTGIQEASRLSGHIKV 129
TKQ LR P F E + F V + W PV+ RLS +K+
Sbjct: 583 PTKQLLR--KPTFRFENFWPRLLGFLEVVQTAWSQPVSASHPVKRLSTKLKM 632
>03_05_0613 +
26124714-26124857,26125692-26126330,26126455-26126695,
26126913-26127496
Length = 535
Score = 27.5 bits (58), Expect = 9.6
Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 6/115 (5%)
Frame = -1
Query: 629 SYTLNRTDVMDLYNIKYAIDPTNKIVIEQVDXVDAFVHILEPGQEVFDETXXRYHQFPGV 450
SYT ++ +L K +P + +E+ + + ++L+ D YH + +
Sbjct: 419 SYTYEDDNMEELDQKKVECEPNKEAALEKFEWISDDENVLDNE----DRVTGAYHGYIDI 474
Query: 449 VS-----SIIFTQLVLNTIISVLSEDGSLLXL-KLENTCFNFHVCNKRFVFGNLP 303
+ IIF L ++ + + L T +N H+ N+RF+ + P
Sbjct: 475 IGFHPYKEIIFLSESLKRGLAYHLSSSKVEDIGNLYPTSYNIHLINERFITASFP 529
>03_04_0163 + 17865529-17865801,17866030-17866102,17866251-17866270
Length = 121
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +1
Query: 463 WWYRXXVSSNTS*PGSRICTNASTXSTCSITILFVGSIAYLILY 594
WW+ S+ S P + + S + LFVG++A ++++
Sbjct: 78 WWWSIGASAVDSQPWRSVTLSGSRSGASLLLGLFVGNVAIILIW 121
>01_05_0204 +
19246633-19246938,19247091-19247192,19247314-19247431,
19247977-19247996,19248122-19248160,19248282-19248342,
19248464-19248664,19248756-19249057,19249448-19249601,
19249683-19249939,19250015-19250045,19251027-19251166,
19252067-19252177,19253071-19253283
Length = 684
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -1
Query: 620 LNRTDVMDLYNIKYAIDPTNKIVIE---QVDXVDAFVHILEPGQEVFDET 480
LNR VMDL++ + NKI + ++ +D I++ G+E DET
Sbjct: 83 LNRDQVMDLFHNCIKLASENKINQKNTWELGLIDHLSEIIQAGEEDDDET 132
>01_01_0601 - 4476261-4476728
Length = 155
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 192 RMAATGDGNSRSVSAVGTHKGAERR 118
R AA G+G S G H+GA RR
Sbjct: 66 REAARGNGGSEGEGGGGAHRGARRR 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,705,406
Number of Sequences: 37544
Number of extensions: 333568
Number of successful extensions: 1008
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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