Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12b15
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z81064-2|CAB02963.1|  259|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U39851-14|AAF99871.2|  354|Caenorhabditis elegans Hypothetical p...    28   6.5  
U39851-13|AAL13325.1|  456|Caenorhabditis elegans Hypothetical p...    28   6.5  
Z83116-9|CAD89748.1|  374|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U39471-1|AAA80132.4|  461|Caenorhabditis elegans Intestinal acid...    27   8.6  

>Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical
           protein M02G9.3 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -2

Query: 151 GCRDT*RCRTASVLKNCDPTCLFTGLCNCRTIK 53
           GCR T  C + S L  C P C  T    C T K
Sbjct: 233 GCRST--CSSTSTLSVCIPACQQTCRSTCSTAK 263


>Z81064-2|CAB02963.1|  259|Caenorhabditis elegans Hypothetical
           protein F16B12.2 protein.
          Length = 259

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 243 RRKASFGCDDVSSCWRKRMAATGDGNSRSVSAVG-THKGAERR 118
           +R A + C D   C  K + +  DG SR   AVG T K  ER+
Sbjct: 168 KRIARWDCSDEGYCQNKGVCSFVDGISRCRCAVGFTGKHCERK 210


>U39851-14|AAF99871.2|  354|Caenorhabditis elegans Hypothetical
           protein C23G10.1a protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = -1

Query: 275 QKLRIGSPIFAGEKLVSVVTTFHRVGENEWLLPVTGIQEASRLSGHIKVPNGVRVEKLR 99
           Q ++ G   FAG+KLV+V +  H +        V  +     +S  +  P  +RVE+++
Sbjct: 283 QVVQDGYEFFAGKKLVTVFSAPHYMQSFTNSAAVCKVSAGLEVSFEVLKPEDIRVEEIK 341


>U39851-13|AAL13325.1|  456|Caenorhabditis elegans Hypothetical
           protein C23G10.1b protein.
          Length = 456

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = -1

Query: 275 QKLRIGSPIFAGEKLVSVVTTFHRVGENEWLLPVTGIQEASRLSGHIKVPNGVRVEKLR 99
           Q ++ G   FAG+KLV+V +  H +        V  +     +S  +  P  +RVE+++
Sbjct: 385 QVVQDGYEFFAGKKLVTVFSAPHYMQSFTNSAAVCKVSAGLEVSFEVLKPEDIRVEEIK 443


>Z83116-9|CAD89748.1|  374|Caenorhabditis elegans Hypothetical
           protein M01B2.11 protein.
          Length = 374

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 641 DFFASYTLNRTDVMDLYNIKYAIDPTNKI 555
           D +  + +N TD  DLY++ +AID + ++
Sbjct: 14  DEYEIFEINSTDTFDLYDLLHAIDLSGQL 42


>U39471-1|AAA80132.4|  461|Caenorhabditis elegans Intestinal acid
           phosphatase protein4 protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 123 VRHLYVSRQPRRFLNSRHR*QPFVFANTMKRR 218
           +R  YV+ QP +FLN+R+  Q     +T K R
Sbjct: 82  LRARYVNGQPYKFLNTRYNQQEIFVRSTDKNR 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,889,158
Number of Sequences: 27780
Number of extensions: 314230
Number of successful extensions: 879
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)