Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12b14
(592 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 195 3e-51
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 195 3e-51
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 137 1e-33
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 137 1e-33
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 137 1e-33
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 86 4e-18
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 43 3e-05
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 41 1e-04
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 40 2e-04
SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier Hub1|Schi... 30 0.29
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 28 0.89
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 26 4.7
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 25 6.2
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar... 25 6.2
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 25 8.3
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 195 bits (476), Expect = 3e-51
Identities = 97/145 (66%), Positives = 110/145 (75%)
Frame = -1
Query: 520 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 341
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 340 IQKESTLHLVXXXXXXXXXXXXKNYSTPXXXXXXXXXXKLAVLRFYKVDENGKIHRLRRE 161
IQKESTLHLV K Y+TP +LAVL++YKV+++G + RLRRE
Sbjct: 61 IQKESTLHLVLRLRGGGKKRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRRE 120
Query: 160 CTGEQCGAGVFMAVMEDRHYCGKCH 86
C CGA FMA +DR YCG+CH
Sbjct: 121 C--PNCGASTFMANHKDRLYCGRCH 143
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 195 bits (476), Expect = 3e-51
Identities = 97/145 (66%), Positives = 110/145 (75%)
Frame = -1
Query: 520 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 341
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 340 IQKESTLHLVXXXXXXXXXXXXKNYSTPXXXXXXXXXXKLAVLRFYKVDENGKIHRLRRE 161
IQKESTLHLV K Y+TP +LAVL++YKV+++G + RLRRE
Sbjct: 61 IQKESTLHLVLRLRGGGKKRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRRE 120
Query: 160 CTGEQCGAGVFMAVMEDRHYCGKCH 86
C CGA FMA +DR YCG+CH
Sbjct: 121 C--PNCGASTFMANHKDRLYCGRCH 143
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 137 bits (332), Expect = 1e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = -1
Query: 520 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 341
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 340 IQKESTLHLV 311
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 137 bits (332), Expect = 1e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = -1
Query: 520 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 341
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 340 IQKESTLHLV 311
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 137 bits (332), Expect = 1e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = -1
Query: 520 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 341
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 340 IQKESTLHLV 311
IQKESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 137 bits (332), Expect = 1e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = -1
Query: 520 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 341
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 340 IQKESTLHLV 311
IQKESTLHLV
Sbjct: 137 IQKESTLHLV 146
Score = 137 bits (332), Expect = 1e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = -1
Query: 520 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 341
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 340 IQKESTLHLV 311
IQKESTLHLV
Sbjct: 213 IQKESTLHLV 222
Score = 137 bits (332), Expect = 1e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = -1
Query: 520 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 341
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 340 IQKESTLHLV 311
IQKESTLHLV
Sbjct: 289 IQKESTLHLV 298
Score = 137 bits (332), Expect = 1e-33
Identities = 66/70 (94%), Positives = 69/70 (98%)
Frame = -1
Query: 520 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 341
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 340 IQKESTLHLV 311
IQKESTLHLV
Sbjct: 365 IQKESTLHLV 374
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 85.8 bits (203), Expect = 4e-18
Identities = 36/70 (51%), Positives = 53/70 (75%)
Frame = -1
Query: 520 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 341
M I VKTLTGK I L+++P+D + +K ++++KEGIPP+QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 340 IQKESTLHLV 311
++ S LHLV
Sbjct: 61 LEGGSVLHLV 70
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 43.2 bits (97), Expect = 3e-05
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = -1
Query: 493 GKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQKESTL 320
GK LE+EP++T +K ++ +PP +Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 41.1 bits (92), Expect = 1e-04
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = -1
Query: 520 MQIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDY 344
M + K L + + +DT I +K KIQ ++ +Q+LI++G+ L D +T+ +Y
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEY 60
Query: 343 NIQKE 329
NI+++
Sbjct: 61 NIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 40.3 bits (90), Expect = 2e-04
Identities = 20/70 (28%), Positives = 36/70 (51%)
Frame = -1
Query: 520 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 341
+ + +K + + V+ ++ +K I I +QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 340 IQKESTLHLV 311
IQ ++HLV
Sbjct: 64 IQDGHSIHLV 73
>SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier
Hub1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 73
Score = 29.9 bits (64), Expect = 0.29
Identities = 16/69 (23%), Positives = 31/69 (44%)
Frame = -1
Query: 520 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 341
+++ GK + ++ P DT+ + K + + G P + L +D TL+DY
Sbjct: 2 IEVLCNDRLGKKVRVKCMPDDTVGDFKKLVAAQTGTDPRRIVLKKWHSVFKDNITLADYE 61
Query: 340 IQKESTLHL 314
I +L +
Sbjct: 62 IHDGMSLEM 70
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 28.3 bits (60), Expect = 0.89
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 331 PSGYCSPRGYVHLPAAFQRRSTSVDWEGF 417
PS + PRG V+ P+ +RR + + GF
Sbjct: 17 PSSFLKPRGLVYRPSQIRRRVSLLSLSGF 45
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -1
Query: 217 VLRFY-KVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKC 89
V+R Y ++ +N + R C E F V++D H KC
Sbjct: 224 VIRCYLRLSDNPRAREALRHCLPEPLRDATFAQVLKDDHNTKKC 267
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 25.4 bits (53), Expect = 6.2
Identities = 19/83 (22%), Positives = 33/83 (39%)
Frame = -1
Query: 583 ICLYYLCSFSLWYGDSVRRVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPN 404
+ +Y F L GD + V+ + + GKT TL VE I+ + + D + +
Sbjct: 271 VSVYESPKFYLAKGDDYKAVETIHKIARINGKTCTLTVEELYAIDRQEQEESDLDDSKSS 330
Query: 403 QQRLIFAGKQLEDGRTLSDYNIQ 335
+ + G L YN +
Sbjct: 331 DAKSVTQGTTNLIVEKLRKYNFE 353
>SPAC17C9.10 |stm1||G-protein coupled receptor
Stm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 6.2
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Frame = -3
Query: 386 RWKAAGRWTY----PL--GLQYPEGIHPPPGVEASWW 294
RWKAA R PL EG+H P G + WW
Sbjct: 99 RWKAARRIASREHEPLLQSRSLEEGLHAPIGKQQIWW 135
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 409 PNQQRLIFAGKQLEDGRTLSDYNI 338
PNQ AGK+L+ R L DY+I
Sbjct: 476 PNQGDTRKAGKRLKYSRNLDDYHI 499
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,185,207
Number of Sequences: 5004
Number of extensions: 39481
Number of successful extensions: 107
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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