Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12b13
(838 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 45 2e-05
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 34 0.022
SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomy... 31 0.15
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 31 0.27
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 29 1.1
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 28 1.4
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 28 1.9
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 28 1.9
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 27 4.4
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 4.4
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 4.4
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 23 4.9
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p... 26 5.8
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 5.8
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 26 5.8
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc... 26 7.6
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 26 7.6
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 26 7.6
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 44.8 bits (101), Expect = 2e-05
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +1
Query: 385 RPGIPAKPDNPSFPLSPLLPIGPGAPYIPSRPLSPGFPRKPFSP 516
RP +P P+ PS P P P+ P P +P RP P P P P
Sbjct: 622 RPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVP 665
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 739 PFAPLAPLSPLGPVKPAGPTL 801
P AP+AP P P +PA P +
Sbjct: 533 PAAPVAPEVPSAPQRPAAPVV 553
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 34.3 bits (75), Expect = 0.022
Identities = 23/57 (40%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = -3
Query: 215 GQTGPMGSPGSQGEPGTPGIEGPAGHKGEKGEAGFDGQKG--ESGPRGYDGNVGPVG 51
G GP PG G G G G H G G GF G G E GP G+ G G G
Sbjct: 196 GSGGPPPGPGGFG--GFGGFGGEGHHHG--GHGGFGGGPGGFEGGPGGFGGGPGGFG 248
>SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 223
Score = 31.5 bits (68), Expect = 0.15
Identities = 22/83 (26%), Positives = 42/83 (50%)
Frame = -1
Query: 277 VPEVMRAHKDLKALMEGRETEVKQDQWAPQEVKVNPEHQELRVLRDIKVKREKLVLMVKK 98
V E+ +LK+ E ++ EV + + + ++ + + E R+ RD++ R V + K
Sbjct: 53 VKELQSKLSELKSKYEAKDKEVAELKGSIRQSLADYRNLENRMKRDMEQTRAFAVQKLTK 112
Query: 97 ESLGLVDTMEMSDP*DLEEKKEN 29
+ L VD +E + EEK+ N
Sbjct: 113 DLLDSVDNLERALSIVPEEKRNN 135
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 30.7 bits (66), Expect = 0.27
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 554 LVQY-HPFVPYDLVLLCHPFHPYLLVYFCEF 643
LVQ+ H F P ++++ H +L YFCEF
Sbjct: 575 LVQHVHSFPPQEVIMQIHSVPQFLYEYFCEF 605
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 28.7 bits (61), Expect = 1.1
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +1
Query: 394 IPAKPDNPSFPLSPLLPIGPGAPYIPSRP 480
+P P + P+SP +P+ P + ++P P
Sbjct: 295 LPFYPFDSGIPVSPNIPVSPSSSFVPMYP 323
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 28.3 bits (60), Expect = 1.4
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -1
Query: 226 RETEVKQDQWAPQEVKVNPEHQELRVLRDIKVKREKLVLMVKKESLGLVDTM 71
R E +Q A EV E L LRD ++ E+L K + L LVD +
Sbjct: 175 RSNEDNLEQMADDEVLRLREQMRLAALRDAELNSEQLPATEKLKMLPLVDAV 226
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 519 DPHLA*QSRLPHWSNITLLSHTTWFSFVTLFTHISLYIFVNSLI 650
DP+L L H+ ++ L T+ SF +L HIS ++ L+
Sbjct: 1167 DPYLMLNLILKHYLSMIYLQFRTYVSFSSLPLHISTVLYQKQLL 1210
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 388 PGIPAKPDNPS-FPLSPLLPIGPGAPYIPSRPLSPG 492
PG+ P P+ FP P +P PG P + P +PG
Sbjct: 527 PGMALPPGMPAPFPGYPAVPAMPGIPGATAPPGAPG 562
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -3
Query: 227 PGDRGQTGPMGSPGSQGEPGTPGIEGPAG 141
PG G T P G+PGS + + P G
Sbjct: 549 PGIPGATAPPGAPGSYNTSESSNLNAPPG 577
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 580 WDKRVILDQWGSLDCQARWGSKEKKVYEEIR 488
W LD W L QA W S+EK V E++
Sbjct: 431 WSYVHSLDFWARLLSQAAWLSREKGVASELQ 461
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 4.4
Identities = 12/46 (26%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -1
Query: 172 PEHQELRVLRDIK-VKREKLVLMVKKESLGLVDTMEMSDP*DLEEK 38
P QE + ++I ++ ++ ++ +S+ +DT +++ P D+EEK
Sbjct: 474 PYGQEKQKRKNISSIENVPIIAEIENKSIDSIDTRKLNRPQDIEEK 519
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 4.4
Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = -3
Query: 233 GRPGDRGQTGPMGSPGSQGEPGTPGIEGPAGHKGEKGEAGFDG--QKGESGPRGYDGNVG 60
GRP + P GS+G G G G G G GF G +G G R + N G
Sbjct: 433 GRPCRLDFSTPRTGGGSRGGRG-----GFGGRGGFGGRGGFGGGRGRGRGGARSGNPNRG 487
Query: 59 PVGP 48
V P
Sbjct: 488 SVAP 491
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 22.6 bits (46), Expect(2) = 4.9
Identities = 6/24 (25%), Positives = 14/24 (58%)
Frame = +2
Query: 581 YDLVLLCHPFHPYLLVYFCEFPYY 652
+ + + HP+ ++ +FC F Y+
Sbjct: 91 FHIAIFIHPYDSNVVPFFCFFFYF 114
Score = 22.2 bits (45), Expect(2) = 4.9
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +2
Query: 359 FHLYLVHPFGQVFLLNQI---IHRFLFLLYYPLAPVRHTFLHVPFH 487
F L+ V F L + I +H F+FL + L + L +P+H
Sbjct: 19 FRLFFVCSFFFPLLYSFIFATLHAFVFLFSHTLVSSQFRRLKLPYH 64
>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -1
Query: 574 KRVILDQWGSLDCQARWGSKEKKVYEEIR 488
K VILD G+L C+A EK VYE R
Sbjct: 24 KLVILDLNGTLLCRALAVRSEKSVYEASR 52
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -1
Query: 307 QVLGDLLVPLVPEVMRAHKDLKALMEGRETEVKQDQWAPQEVKVNPE 167
++ G +L LVP + + E E E K+++ EV + PE
Sbjct: 2180 RITGSVLFALVPPALEKYNLENQKKEILENESKEEETRQPEVNIQPE 2226
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.8
Identities = 20/77 (25%), Positives = 32/77 (41%)
Frame = -1
Query: 286 VPLVPEVMRAHKDLKALMEGRETEVKQDQWAPQEVKVNPEHQELRVLRDIKVKREKLVLM 107
+ L ++M A E +V + APQ+ K+NP+ R I E
Sbjct: 316 IHLPSDIMEDDSSRPAAAGVEEGQVVESATAPQQEKINPQKTVRRQRAIIDPVTELSSKQ 375
Query: 106 VKKESLGLVDTMEMSDP 56
+KK+ L DT ++ P
Sbjct: 376 MKKQ---LADTSSITSP 389
>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 713
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 434 LYYPLAPVRHTFLHVPFHPDFLVNLFLL*SPSGLTVQAPP 553
+Y L V + FL + + F++N+F + SP+G Q PP
Sbjct: 587 IYRILGKVTYKFLKLVQY--FIINIFDILSPAGPDSQLPP 624
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -1
Query: 577 DKRVILDQWGSL-DCQARWGSKEKKVYEEIRVKGDVK 470
D RV D W + + + R+G+ E+ V E +R+K V+
Sbjct: 692 DPRVETDYWKAWQEFEIRYGNPEETVKEMLRIKRSVQ 728
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 406 PDNPSFPLSPLLPIGPGAPYIPSRPLSPGFPRKPFSPL 519
PD S+ LSP+ P P +P FP+ P+ L
Sbjct: 81 PDRKSYSLSPISPQSQDMLRQPQKP-KRAFPKTPYKIL 117
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,346,812
Number of Sequences: 5004
Number of extensions: 72210
Number of successful extensions: 269
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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