Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12b13
         (838 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    26   0.37 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   8.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   8.1  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 26.2 bits (55), Expect = 0.37
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 424 PLSPLLPIGPGAPYIPSRPLSPGFPRKPFSPL 519
           PLS  +P  P A  +P    S   PR P  P+
Sbjct: 759 PLSVSIPPPPSAQNVPQNTNSQAIPRIPILPM 790


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 751 LAPLSPLGPVKPAGP 795
           L P+SP G VKP  P
Sbjct: 319 LTPVSPYGYVKPISP 333


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -3

Query: 815  KDQKARVGPAGLTGPKGDK 759
            K QK    P G+ GP G K
Sbjct: 1127 KPQKPFTSPGGIPGPNGIK 1145


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 242 GTDGRPGDRGQTG 204
           G+ GR G+RG+TG
Sbjct: 90  GSRGRGGNRGRTG 102


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 739  PFAPLAPLSPLGPVKPAGPTLAFW 810
            P  P AP+  +GP     P   FW
Sbjct: 961  PSEPKAPMILVGPGTGIAPFRGFW 984


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,407
Number of Sequences: 438
Number of extensions: 5438
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)