Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12b11
(877 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT011339-1|AAR96131.1| 465|Drosophila melanogaster RH62603p pro... 484 e-137
AF016835-1|AAC26144.1| 416|Drosophila melanogaster ribosomal pr... 484 e-137
AE014297-1265|AAF54609.1| 403|Drosophila melanogaster CG4863-PE... 484 e-137
AE014297-1264|AAN13496.1| 403|Drosophila melanogaster CG4863-PB... 484 e-137
AE014297-1262|AAF54610.2| 416|Drosophila melanogaster CG4863-PA... 484 e-137
>BT011339-1|AAR96131.1| 465|Drosophila melanogaster RH62603p
protein.
Length = 465
Score = 484 bits (1193), Expect = e-137
Identities = 222/282 (78%), Positives = 243/282 (86%)
Frame = -3
Query: 875 YKNWYXXXXXXXXXXXXKWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKA 696
YKNWY KW D+LG+KSIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKA
Sbjct: 130 YKNWYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKA 189
Query: 695 HIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTK 516
H+MEIQLNGG+IEDKVKWAREHLEKPI V +VF QDEMIDC+ TSRWHTK
Sbjct: 190 HVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTK 249
Query: 515 KLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKV 336
KLPRKTHKGLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGKV
Sbjct: 250 KLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKV 309
Query: 335 IKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRA 156
IKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL HTKR+
Sbjct: 310 IKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRS 369
Query: 155 ALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 30
ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 370 ALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 411
>AF016835-1|AAC26144.1| 416|Drosophila melanogaster ribosomal
protein L3 protein.
Length = 416
Score = 484 bits (1193), Expect = e-137
Identities = 222/282 (78%), Positives = 243/282 (86%)
Frame = -3
Query: 875 YKNWYXXXXXXXXXXXXKWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKA 696
YKNWY KW D+LG+KSIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKA
Sbjct: 119 YKNWYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKA 178
Query: 695 HIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTK 516
H+MEIQLNGG+IEDKVKWAREHLEKPI V +VF QDEMIDC+ TSRWHTK
Sbjct: 179 HVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTK 238
Query: 515 KLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKV 336
KLPRKTHKGLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGKV
Sbjct: 239 KLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKV 298
Query: 335 IKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRA 156
IKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL HTKR+
Sbjct: 299 IKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRS 358
Query: 155 ALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 30
ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 359 ALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 400
>AE014297-1265|AAF54609.1| 403|Drosophila melanogaster CG4863-PE,
isoform E protein.
Length = 403
Score = 484 bits (1193), Expect = e-137
Identities = 222/282 (78%), Positives = 243/282 (86%)
Frame = -3
Query: 875 YKNWYXXXXXXXXXXXXKWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKA 696
YKNWY KW D+LG+KSIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKA
Sbjct: 106 YKNWYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKA 165
Query: 695 HIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTK 516
H+MEIQLNGG+IEDKVKWAREHLEKPI V +VF QDEMIDC+ TSRWHTK
Sbjct: 166 HVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTK 225
Query: 515 KLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKV 336
KLPRKTHKGLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGKV
Sbjct: 226 KLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKV 285
Query: 335 IKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRA 156
IKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL HTKR+
Sbjct: 286 IKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRS 345
Query: 155 ALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 30
ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 346 ALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 387
>AE014297-1264|AAN13496.1| 403|Drosophila melanogaster CG4863-PB,
isoform B protein.
Length = 403
Score = 484 bits (1193), Expect = e-137
Identities = 222/282 (78%), Positives = 243/282 (86%)
Frame = -3
Query: 875 YKNWYXXXXXXXXXXXXKWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKA 696
YKNWY KW D+LG+KSIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKA
Sbjct: 106 YKNWYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKA 165
Query: 695 HIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTK 516
H+MEIQLNGG+IEDKVKWAREHLEKPI V +VF QDEMIDC+ TSRWHTK
Sbjct: 166 HVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTK 225
Query: 515 KLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKV 336
KLPRKTHKGLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGKV
Sbjct: 226 KLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKV 285
Query: 335 IKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRA 156
IKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL HTKR+
Sbjct: 286 IKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRS 345
Query: 155 ALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 30
ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 346 ALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 387
>AE014297-1262|AAF54610.2| 416|Drosophila melanogaster CG4863-PA,
isoform A protein.
Length = 416
Score = 484 bits (1193), Expect = e-137
Identities = 222/282 (78%), Positives = 243/282 (86%)
Frame = -3
Query: 875 YKNWYXXXXXXXXXXXXKWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKA 696
YKNWY KW D+LG+KSIE DF+KM+RYC V+RVIAH+Q++L+KQRQKKA
Sbjct: 119 YKNWYKSKKKAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKA 178
Query: 695 HIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTK 516
H+MEIQLNGG+IEDKVKWAREHLEKPI V +VF QDEMIDC+ TSRWHTK
Sbjct: 179 HVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTK 238
Query: 515 KLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKV 336
KLPRKTHKGLRKVACIGAWHPSRVS TVARAGQKGYHHRTE+NKKIYRIG GIH KDGKV
Sbjct: 239 KLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKV 298
Query: 335 IKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRA 156
IKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+G KKRIITLRKSL HTKR+
Sbjct: 299 IKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRS 358
Query: 155 ALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 30
ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++EE
Sbjct: 359 ALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLKEE 400
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,173,425
Number of Sequences: 53049
Number of extensions: 897057
Number of successful extensions: 2362
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2362
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4250176164
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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