Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12b11
(877 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 395 e-110
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 395 e-110
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 395 e-110
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 395 e-110
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 391 e-109
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 391 e-109
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 269 2e-72
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 269 2e-72
U13875-9|AAA21160.3| 403|Caenorhabditis elegans Hypothetical pr... 29 5.8
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 395 bits (972), Expect = e-110
Identities = 187/281 (66%), Positives = 219/281 (77%)
Frame = -3
Query: 875 YKNWYXXXXXXXXXXXXKWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKA 696
Y NW KWQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKA
Sbjct: 119 YSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKA 178
Query: 695 HIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTK 516
H++EIQ+NGGTIE KV WAREHLEK + VD+VFAQDEMID I TSRWHTK
Sbjct: 179 HLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTK 238
Query: 515 KLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKV 336
KLPRKTHKGLRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG+ ++G
Sbjct: 239 KLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG-- 296
Query: 335 IKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRA 156
KNN STE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR
Sbjct: 297 -KNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRV 355
Query: 155 ALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 33
A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 356 AHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 395 bits (972), Expect = e-110
Identities = 187/281 (66%), Positives = 219/281 (77%)
Frame = -3
Query: 875 YKNWYXXXXXXXXXXXXKWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKA 696
Y NW KWQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKA
Sbjct: 119 YSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKA 178
Query: 695 HIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTK 516
H++EIQ+NGGTIE KV WAREHLEK + VD+VFAQDEMID I TSRWHTK
Sbjct: 179 HLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTK 238
Query: 515 KLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKV 336
KLPRKTHKGLRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG+ ++G
Sbjct: 239 KLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG-- 296
Query: 335 IKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRA 156
KNN STE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR
Sbjct: 297 -KNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRV 355
Query: 155 ALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 33
A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 356 AHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 395 bits (972), Expect = e-110
Identities = 187/281 (66%), Positives = 219/281 (77%)
Frame = -3
Query: 875 YKNWYXXXXXXXXXXXXKWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKA 696
Y NW KWQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKA
Sbjct: 119 YSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKA 178
Query: 695 HIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTK 516
H++EIQ+NGGTIE KV WAREHLEK + VD+VFAQDEMID I TSRWHTK
Sbjct: 179 HLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTK 238
Query: 515 KLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKV 336
KLPRKTHKGLRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG+ ++G
Sbjct: 239 KLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG-- 296
Query: 335 IKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRA 156
KNN STE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR
Sbjct: 297 -KNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRV 355
Query: 155 ALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 33
A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 356 AHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 395 bits (972), Expect = e-110
Identities = 187/281 (66%), Positives = 219/281 (77%)
Frame = -3
Query: 875 YKNWYXXXXXXXXXXXXKWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKA 696
Y NW KWQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKA
Sbjct: 119 YSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKA 178
Query: 695 HIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTK 516
H++EIQ+NGGTIE KV WAREHLEK + VD+VFAQDEMID I TSRWHTK
Sbjct: 179 HLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTK 238
Query: 515 KLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKV 336
KLPRKTHKGLRKVACIGAWHPSRV+FTVARAGQKG+HHRT +N KIYRIG+ ++G
Sbjct: 239 KLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG-- 296
Query: 335 IKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRA 156
KNN STE+DL++K+ITPMGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR
Sbjct: 297 -KNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRV 355
Query: 155 ALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 33
A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 356 AHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 396
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 391 bits (963), Expect = e-109
Identities = 183/263 (69%), Positives = 215/263 (81%)
Frame = -3
Query: 821 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKW 642
WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKAH++EIQ+NGGTIE KV W
Sbjct: 39 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDW 98
Query: 641 AREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGA 462
AREHLEK + VD+VFAQDEMID I TSRWHTKKLPRKTHKGLRKVACIGA
Sbjct: 99 AREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGA 158
Query: 461 WHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITP 282
WHPSRV+FTVARAGQKG+HHRT +N KIYRIG+ ++G KNN STE+DL++K+ITP
Sbjct: 159 WHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG---KNNGSTEFDLTQKTITP 215
Query: 281 MGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGH 102
MGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK GH
Sbjct: 216 MGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGH 275
Query: 101 GRFQTPADKAAFMGTLKKDRIRE 33
GRFQT A+K AFMG LK+D + E
Sbjct: 276 GRFQTTAEKRAFMGKLKRDFLAE 298
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 391 bits (963), Expect = e-109
Identities = 183/263 (69%), Positives = 215/263 (81%)
Frame = -3
Query: 821 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKW 642
WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKAH++EIQ+NGGTIE KV W
Sbjct: 39 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDW 98
Query: 641 AREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGA 462
AREHLEK + VD+VFAQDEMID I TSRWHTKKLPRKTHKGLRKVACIGA
Sbjct: 99 AREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGA 158
Query: 461 WHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITP 282
WHPSRV+FTVARAGQKG+HHRT +N KIYRIG+ ++G KNN STE+DL++K+ITP
Sbjct: 159 WHPSRVAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEG---KNNGSTEFDLTQKTITP 215
Query: 281 MGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGH 102
MGGFP YG VN D++M++G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK GH
Sbjct: 216 MGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGH 275
Query: 101 GRFQTPADKAAFMGTLKKDRIRE 33
GRFQT A+K AFMG LK+D + E
Sbjct: 276 GRFQTTAEKRAFMGKLKRDFLAE 298
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 269 bits (659), Expect = 2e-72
Identities = 128/190 (67%), Positives = 149/190 (78%)
Frame = -3
Query: 602 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARA 423
V A +MID I TSRWHTKKLPRKTHKGLRKVACIGAWHPSRV+FTVARA
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARA 221
Query: 422 GQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNND 243
GQKG+HHRT +N KIYRIG+ ++GK NN STE+DL++K+ITPMGGFP YG VN D
Sbjct: 222 GQKGFHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLTQKTITPMGGFPRYGIVNQD 278
Query: 242 FVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFM 63
++M++G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A+K AFM
Sbjct: 279 YIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFM 338
Query: 62 GTLKKDRIRE 33
G LK+D + E
Sbjct: 339 GKLKRDFLAE 348
Score = 56.0 bits (129), Expect = 3e-08
Identities = 26/50 (52%), Positives = 30/50 (60%)
Frame = -3
Query: 875 YKNWYXXXXXXXXXXXXKWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 726
Y NW KWQDE G+K IE DF K+ +YCS +RVIAHTQM
Sbjct: 119 YSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 269 bits (659), Expect = 2e-72
Identities = 128/190 (67%), Positives = 149/190 (78%)
Frame = -3
Query: 602 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARA 423
V A +MID I TSRWHTKKLPRKTHKGLRKVACIGAWHPSRV+FTVARA
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARA 221
Query: 422 GQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNND 243
GQKG+HHRT +N KIYRIG+ ++GK NN STE+DL++K+ITPMGGFP YG VN D
Sbjct: 222 GQKGFHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLTQKTITPMGGFPRYGIVNQD 278
Query: 242 FVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFM 63
++M++G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A+K AFM
Sbjct: 279 YIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFM 338
Query: 62 GTLKKDRIRE 33
G LK+D + E
Sbjct: 339 GKLKRDFLAE 348
Score = 56.0 bits (129), Expect = 3e-08
Identities = 26/50 (52%), Positives = 30/50 (60%)
Frame = -3
Query: 875 YKNWYXXXXXXXXXXXXKWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 726
Y NW KWQDE G+K IE DF K+ +YCS +RVIAHTQM
Sbjct: 119 YSNWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
>U13875-9|AAA21160.3| 403|Caenorhabditis elegans Hypothetical
protein C26E6.6 protein.
Length = 403
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -3
Query: 530 RWHTKKLP-RKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 369
RW + P R+T K R++ +G+ +R+ G GY RT +I RI
Sbjct: 241 RWGMRGQPTRRTTKSHRRIGSVGSVGDARIWPGKRMPGHMGYEWRTVSGLEIVRI 295
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,103,350
Number of Sequences: 27780
Number of extensions: 465893
Number of successful extensions: 1309
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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