Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12b07
         (253 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    26   0.66 
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   1.2  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   1.5  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    24   2.7  
SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   3.5  
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   4.7  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    23   4.7  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    23   6.2  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    23   6.2  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    23   6.2  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    23   6.2  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    23   8.2  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    23   8.2  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    23   8.2  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    23   8.2  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    23   8.2  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    23   8.2  

>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 0.66
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = -2

Query: 207 NASIFKKNYNNVKVASYIEVPYTTNNADVEMTDTTNAPSRPKSK 76
           + S +  N++N+ +  +   P+ TN++     D + + S  KSK
Sbjct: 53  STSSYSGNHHNINIQHHPNRPFRTNSSSFSPNDYSISESPSKSK 96


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -2

Query: 186 NYNNVKVASYIEVPYTTNNADVEMTDTTNAPSRPKSKARRRL 61
           NY NVK+ +          A + +  TTNA  +P  K  + L
Sbjct: 67  NYTNVKITATQNNVDALTGAPIRIVTTTNARIQPDEKTLQDL 108


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = -2

Query: 231 HPYQRAPWNASIFKKNYNNVK-VASYIEVPYTTNNA-DVEMTDTT-NAPSRPKSKARRRL 61
           H Y+        F  + +N++ + S I VP   ++  D+E  D   + P RP S A +  
Sbjct: 223 HRYKSQHHRLRQFYADCSNLRYLTSLISVPRLPHDPPDLEGDDNIPDLPKRPASIAPQPT 282

Query: 60  DFTNMAPQP 34
             + +APQP
Sbjct: 283 GASTIAPQP 291


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +1

Query: 103 CCVSHFDVCI 132
           CC+ H+D+CI
Sbjct: 155 CCLKHYDLCI 164


>SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 171 KVASYIEVPYTTNNADVEMTDTTNAPSRPKSKARRRLDF 55
           K+A  ++   +++N      +  +  S P SKAR+  DF
Sbjct: 4   KIADLLQELQSSSNVTSNQLENVDKSSIPLSKARKPSDF 42


>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 430

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 132 NADVEMTDTTNAPSRPKSKARRRLDFTN 49
           +AD  M D + +  R KSK ++ + FT+
Sbjct: 213 DADHAMIDESRSTQRRKSKPKKHVAFTD 240


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1136

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 30   NTAAAPCW*NLIFS 71
            N  + PCW N++FS
Sbjct: 1012 NVESQPCWYNILFS 1025


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -3

Query: 251 IIQWRDIIRINERRGTHQYLKKIIIMLKSL 162
           I QWRD I    RRG +  L   I  L  L
Sbjct: 153 IAQWRDTIEEIHRRGFYLVLDLTISTLGDL 182


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 234 YHPYQRAPWNASIFKKNYN 178
           Y P+ RA  NASI  KN++
Sbjct: 502 YRPFLRANDNASINNKNHH 520


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 129 ADVEMTDTTNAPSRPKSKARRRLDFTN 49
           ++++ T T++A S+P ++  R   FTN
Sbjct: 438 SNMDETGTSSAGSKPFNRKSRNRSFTN 464


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 228  PYQRAPWNASIFKKNYNNVKVASYIEVPYTTNN 130
            P   A W+ SI+     N     +++VPY T N
Sbjct: 1152 PLSLATWSKSIYINREGN-----FLDVPYNTRN 1179


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -2

Query: 201 SIFKKNYNNVKVASYIEVPYTT--NNADVEMTDTTNAPSRPKSKARRRLDFTNMAPQP 34
           S  K+ +N+  + ++   P  +  +N  VE   T+ +    ++++ R  DF    P+P
Sbjct: 193 SASKQAFNSPLLQTFSPSPSVSPFSNPAVEKLKTSASKQAAEAQSLREFDFFTPTPEP 250


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -2

Query: 165 ASYIEVPYTTNNADVEMTDTTNAPSRPKSKARRRLDF 55
           ++YI+   + + +D+E   + +     KSKA+  +DF
Sbjct: 589 STYIDDSSSNSPSDIESNYSADDNEISKSKAQNAIDF 625


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = -2

Query: 198 IFKKNY-NNVKVASYIEVPYTTNNADVEMTDTTNAPSRPKSKARRRLDFTN 49
           I  K+Y  + K  SY + P  + N D    D  +  S P+S      DF +
Sbjct: 147 ISPKSYLTSSKTFSYPKAPTESTNGDYLDEDYVDGQSDPESSNASDSDFAD 197


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -2

Query: 240 ERYHPYQRAPWNASIFKKNYNN 175
           ER+H      WN + +K  Y +
Sbjct: 485 ERFHRLPEVQWNRAFYKTYYES 506


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -2

Query: 207 NASIFKKNYNNVKVASYIEVPYTTNNADVEMTDTTNAPS 91
           N S    +YN + V    E  Y+T+N   +  D  + P+
Sbjct: 422 NPSTLDDDYNYMFVCPPEEYTYSTDNVRTDSLDLQSLPT 460


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 213 PWNASIFKKNYNNVKVASYIEVPYTTNN 130
           P N   +K+N  N +V+S+    Y+T N
Sbjct: 221 PLNGVNYKQNTTNNRVSSFQNSQYSTLN 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,054,005
Number of Sequences: 5004
Number of extensions: 18572
Number of successful extensions: 46
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)