Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12b07
         (253 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT028850-1|ABI34231.2|  367|Drosophila melanogaster RT01124p pro...    26   6.0  
BT028818-1|ABI34199.2|  367|Drosophila melanogaster RT01024p pro...    26   6.0  
AY061403-1|AAL28951.1| 1486|Drosophila melanogaster LD33266p pro...    26   8.0  
AE014297-1259|AAF54606.1|  383|Drosophila melanogaster CG4820-PA...    26   8.0  
AE014296-3600|AAF51764.1| 1486|Drosophila melanogaster CG7158-PA...    26   8.0  

>BT028850-1|ABI34231.2|  367|Drosophila melanogaster RT01124p
           protein.
          Length = 367

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = -2

Query: 228 PYQRAPWNASIFKKNYNNVKVASYIEVPYTTNNADVEMTDTTNAPSRPKSK 76
           P    P N      +Y N      + +P     A  E+  TTN P++ +SK
Sbjct: 134 PQAPCPENQLEQALSYGNAPGEDILPLPEDYGEAQTEVATTTNEPAQRRSK 184


>BT028818-1|ABI34199.2|  367|Drosophila melanogaster RT01024p
           protein.
          Length = 367

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = -2

Query: 228 PYQRAPWNASIFKKNYNNVKVASYIEVPYTTNNADVEMTDTTNAPSRPKSK 76
           P    P N      +Y N      + +P     A  E+  TTN P++ +SK
Sbjct: 134 PQAPCPENQLEQALSYGNAPGEDILPLPEDYGEAQTEVATTTNEPAQRRSK 184


>AY061403-1|AAL28951.1| 1486|Drosophila melanogaster LD33266p protein.
          Length = 1486

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = -2

Query: 183  YNNVKVASYIEVPYTTNNADVEMTDTTNAPSRPKSKARRRLDFTNMAPQPCCIDDGNFAK 4
            +NN+ ++  + +P  T++   +   TT+A S+ +++A   LDF    P+     +   +K
Sbjct: 1062 FNNILLS--LPLPQKTSSPLAKARTTTSALSKLQTEAASALDFLGFPPRRIQSQEALNSK 1119

Query: 3    P 1
            P
Sbjct: 1120 P 1120


>AE014297-1259|AAF54606.1|  383|Drosophila melanogaster CG4820-PA
           protein.
          Length = 383

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 186 NYNNVKVASYIEVPYTTNNADVEMTDTTNAPSRPKSK 76
           +Y N      + +P     A  E+  TTN P++ +SK
Sbjct: 164 SYGNAPGEDILPLPEDYGEAQTEVATTTNEPAQRRSK 200


>AE014296-3600|AAF51764.1| 1486|Drosophila melanogaster CG7158-PA
            protein.
          Length = 1486

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = -2

Query: 183  YNNVKVASYIEVPYTTNNADVEMTDTTNAPSRPKSKARRRLDFTNMAPQPCCIDDGNFAK 4
            +NN+ ++  + +P  T++   +   TT+A S+ +++A   LDF    P+     +   +K
Sbjct: 1062 FNNILLS--LPLPQKTSSPLAKARTTTSALSKLQTEAASALDFLGFPPRRIQSQEALNSK 1119

Query: 3    P 1
            P
Sbjct: 1120 P 1120


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,266,075
Number of Sequences: 53049
Number of extensions: 198696
Number of successful extensions: 548
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 24,988,368
effective HSP length: 63
effective length of database: 21,646,281
effective search space used: 432925620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)