Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12b07
         (253 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00046-6|AAN65305.1|  422|Caenorhabditis elegans Mammalian zak k...    27   1.8  
U00046-5|AAC47047.4|  516|Caenorhabditis elegans Mammalian zak k...    27   1.8  
Z68214-1|CAA92444.1|  846|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z49130-3|CAA88968.1|  395|Caenorhabditis elegans Hypothetical pr...    25   5.4  
AF036689-3|AAB88322.2|  557|Caenorhabditis elegans Hypothetical ...    25   7.1  
Z81124-9|CAB03379.2|  328|Caenorhabditis elegans Hypothetical pr...    25   9.4  
U13019-10|AAC24442.1|  757|Caenorhabditis elegans Hypothetical p...    25   9.4  
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ...    25   9.4  
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage...    25   9.4  
AF101318-6|AAC69348.2|  946|Caenorhabditis elegans Hypothetical ...    25   9.4  

>U00046-6|AAN65305.1|  422|Caenorhabditis elegans Mammalian zak
           kinase homolog protein1, isoform b protein.
          Length = 422

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 141 TTNNADVEMTDTTNAPSRPKSKARR 67
           TTN+ D E +DT N    P+S+ARR
Sbjct: 378 TTNSEDTEKSDTNN--KTPESQARR 400


>U00046-5|AAC47047.4|  516|Caenorhabditis elegans Mammalian zak
           kinase homolog protein1, isoform a protein.
          Length = 516

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 141 TTNNADVEMTDTTNAPSRPKSKARR 67
           TTN+ D E +DT N    P+S+ARR
Sbjct: 472 TTNSEDTEKSDTNN--KTPESQARR 494


>Z68214-1|CAA92444.1|  846|Caenorhabditis elegans Hypothetical
           protein C10C5.1 protein.
          Length = 846

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 215 RRGTHQYLKKIIIMLKSLHTLKYLTQQI 132
           R G +  +KK +I   +LH L   T QI
Sbjct: 230 RHGVYNQIKKFLIFYSALHFLVLYTYQI 257


>Z49130-3|CAA88968.1|  395|Caenorhabditis elegans Hypothetical
           protein T06D8.5 protein.
          Length = 395

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 43  RHVGKI*SSPCFRFWARGR 99
           R +G +   PC  FWARGR
Sbjct: 141 RAIGIVFLIPCAYFWARGR 159


>AF036689-3|AAB88322.2|  557|Caenorhabditis elegans Hypothetical
           protein C50A2.2 protein.
          Length = 557

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +1

Query: 19  VVNTTRLRRHVGKI*SSPCFRFWARGRIC 105
           +V   R   H+      PCF  W  G++C
Sbjct: 475 IVKNNRFNAHI----DVPCFTLWMNGKMC 499


>Z81124-9|CAB03379.2|  328|Caenorhabditis elegans Hypothetical
           protein T21B4.12 protein.
          Length = 328

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 97  RICCVSHFDVCIIC 138
           +ICC + F  CI+C
Sbjct: 56  KICCFNSFGSCIVC 69


>U13019-10|AAC24442.1|  757|Caenorhabditis elegans Hypothetical
           protein T12A2.2 protein.
          Length = 757

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 159 YIEVPYTTNNADVEMTDTTNAPSRPKSKA 73
           YIE  YTT N  V +      P+RP  K+
Sbjct: 698 YIEEAYTTENWLVRIYKRKKLPNRPTVKS 726


>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
            protein Y39A1B.3 protein.
          Length = 1499

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -2

Query: 129  ADVEMTDTTNAPSRPKSKARRR 64
            +D + +D+ +AP+ P+S ARR+
Sbjct: 1458 SDEDDSDSDDAPAAPRSAARRK 1479


>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
            compensation protein protein.
          Length = 1455

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -2

Query: 129  ADVEMTDTTNAPSRPKSKARRR 64
            +D + +D+ +AP+ P+S ARR+
Sbjct: 1414 SDEDDSDSDDAPAAPRSAARRK 1435


>AF101318-6|AAC69348.2|  946|Caenorhabditis elegans Hypothetical
           protein Y73C8C.8 protein.
          Length = 946

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 12  NCRRQYNTAAAPCW 53
           NC+RQY+T  A  W
Sbjct: 909 NCKRQYHTGCAQKW 922


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,842,291
Number of Sequences: 27780
Number of extensions: 106075
Number of successful extensions: 249
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 219801160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)