Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12b03
(211 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 29 0.084
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|... 26 0.78
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 25 1.0
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 24 2.4
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 23 4.2
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 23 5.5
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 23 7.3
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc... 23 7.3
SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8... 23 7.3
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 23 7.3
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc... 22 9.6
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 22 9.6
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 22 9.6
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 22 9.6
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr... 22 9.6
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 29.1 bits (62), Expect = 0.084
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -1
Query: 175 DNYSLHNFYNNNRKPLKPTTLHDGNIK-KSVYENI 74
DNYSL F N N P KP+ H +K ++++E++
Sbjct: 112 DNYSLVIFSNQNGIPRKPSAGHTFQMKIRAIFESL 146
>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
3|||Manual
Length = 258
Score = 25.8 bits (54), Expect = 0.78
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -1
Query: 196 YCLCCTMDNYSLHNFYNNNRKPLKPTTLHDGNIKKSVYENITYVRKLMCKENMP 35
+CL CT+ L FY K +K T + K+ + I + K ENMP
Sbjct: 116 WCLVCTLALIFLTYFYETWTKAVKVTVIFLAQCVKACGKGIKHFLKKW--ENMP 167
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 25.4 bits (53), Expect = 1.0
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -1
Query: 160 HNFYNNNRKPLKPTTLHDGNIKKSVYENITYVRKLMCKENMPGEHDHKFYNR 5
HN Y++ KP+ L KS Y +++ R L K++ G D KF+ +
Sbjct: 326 HNIYSSFIKPIDDRRLEFDEQSKSFYGSLS--RYLSAKKDKKG-GDSKFFQK 374
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 24.2 bits (50), Expect = 2.4
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = -1
Query: 154 FYNNNRK--PLKPTTLHDGNIKKSVYENITYVRKLM 53
F N K PL+P+ HD K S Y R++M
Sbjct: 514 FVNKRSKVLPLRPSVTHDNLSKSSDYSKNEVEREIM 549
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 23.4 bits (48), Expect = 4.2
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -1
Query: 172 NYSLHNFYNNNRKPLKP 122
NY+ N YN N K KP
Sbjct: 233 NYTRSNAYNKNNKDQKP 249
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 23.0 bits (47), Expect = 5.5
Identities = 9/22 (40%), Positives = 10/22 (45%)
Frame = +1
Query: 142 CCCKNCATNNYP*CSTGNITDA 207
CCC C + P GNI A
Sbjct: 1103 CCCSKCNSTMSPFWWPGNICQA 1124
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 22.6 bits (46), Expect = 7.3
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +1
Query: 130 EVCGCCCKNCATNNY 174
++ G CC+NC NY
Sbjct: 155 QIEGWCCQNCDILNY 169
>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 329
Score = 22.6 bits (46), Expect = 7.3
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = -1
Query: 196 YCLCCTMDNYSLHNFYNNNRKPLKPTTLHDGNIKKSVYENITYVRKLM 53
+CL CT+ L FY K +K T + K + + +R+ M
Sbjct: 116 WCLVCTLALIFLTYFYETWVKAVKVTVISLAKCVKVISIGLFNIRREM 163
>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
Cut8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 22.6 bits (46), Expect = 7.3
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = -1
Query: 133 PLKPTTLHDGNIKKSVYENITYVRKLMCKENMPGEHDHKF 14
PL+ H+ + + E + Y+++L E + E H F
Sbjct: 190 PLEELEEHNKTSQNRMEEALNYLKQLQKNEPLVHERSHTF 229
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 22.6 bits (46), Expect = 7.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 196 YCLCCTMDNYSLHNFYNNNRKPLKPTTLHDGNIKK 92
+CL CT+ L FY K +K T + N +K
Sbjct: 116 WCLVCTLALIFLTYFYETWTKAVKVTAVGLYNSRK 150
>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 372
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 115 LHDGNIKKSVYENITYV 65
L DGN+K EN T+V
Sbjct: 51 LLDGNLKSKELENATFV 67
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 22.2 bits (45), Expect = 9.6
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = -1
Query: 139 RKP--LKPTTLHDGNIKKSVYENITYVRKLMCKENMPGEHD 23
RKP L +TLH N K+ + M K N+PG +
Sbjct: 133 RKPSSLSSSTLHSVNEKQPNSSISPTIESSMNKVNLPGAEE 173
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 22.2 bits (45), Expect = 9.6
Identities = 11/35 (31%), Positives = 14/35 (40%)
Frame = +1
Query: 79 FRKPIF*CYHRVTLSA*EVCGCCCKNCATNNYP*C 183
F+ P Y R + GC CKNC + C
Sbjct: 405 FKLPTSCSYCREIIWGLSKRGCVCKNCGFKCHARC 439
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 22.2 bits (45), Expect = 9.6
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1
Query: 148 CKNCATNNYP 177
C+NCAT N P
Sbjct: 172 CQNCATTNTP 181
>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
3|||Manual
Length = 269
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -1
Query: 196 YCLCCTMDNYSLHNFYNNNRKPLKPTTL 113
+CL CT+ L FY K +K T +
Sbjct: 116 WCLVCTLALIFLTYFYETWTKAVKVTVI 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 839,928
Number of Sequences: 5004
Number of extensions: 13866
Number of successful extensions: 55
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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