Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12b02
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   190   2e-49
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    83   6e-17
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    79   1e-15
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    54   3e-08
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    28   1.5  
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    26   5.9  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    26   5.9  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  190 bits (463), Expect = 2e-49
 Identities = 83/105 (79%), Positives = 98/105 (93%)
 Frame = -1

Query: 855 MSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKR 676
           +SMKEVDEQ+ ++Q KNS+YFVEWIP+NV  AVC +PP+ LKM+ATFIGNST+IQE+F+R
Sbjct: 321 VSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEIFRR 380

Query: 675 ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 541
           + +QF+AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 381 LGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 82.6 bits (195), Expect = 6e-17
 Identities = 36/109 (33%), Positives = 63/109 (57%), Gaps = 8/109 (7%)
 Frame = -1

Query: 846 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLK--------MAATFIGNSTAIQ 691
           ++V   +  I+ K +  FV+W P   K  +CD PP+ ++         A   + N+T+I 
Sbjct: 326 RDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIA 385

Query: 690 ELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 544
           E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct: 386 EAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 78.6 bits (185), Expect = 1e-15
 Identities = 34/109 (31%), Positives = 63/109 (57%), Gaps = 8/109 (7%)
 Frame = -1

Query: 846 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGL--------KMAATFIGNSTAIQ 691
           ++V   + +I+++ +  FV+W P   K  +C  PP+ +          A   + N+T+I 
Sbjct: 330 RDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIA 389

Query: 690 ELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 544
           E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct: 390 EAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 438


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 54.0 bits (124), Expect = 3e-08
 Identities = 29/105 (27%), Positives = 57/105 (54%), Gaps = 6/105 (5%)
 Frame = -1

Query: 843 EVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP---RGLKMAATFIGNSTAIQELFKRI 673
           +V + +L I+ +  + F+ W P +++ A+    P      +++   + N T+I  LFKR 
Sbjct: 332 DVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGLMLANHTSIASLFKRT 391

Query: 672 SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN---DLVSEYQ 547
            +Q+  + +R AFL  Y  E + E +  E +S+ +   DL++EY+
Sbjct: 392 LDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 708 NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 601
           NS+ IQ L K I+   T  +R    ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228


>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 365 SYYINTKSKSIVDLSKGERWKGG 433
           SY++     SI+  S G++WK G
Sbjct: 56  SYFVTRNKSSIIAFSIGKKWKPG 78


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 392 FCFSYLYSNFNSFRLQHA**NNLGSTR 312
           FCF   ++ F+SFR Q+A   NL S R
Sbjct: 243 FCFLKSFAMFSSFRSQNANLYNLNSIR 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,076,336
Number of Sequences: 5004
Number of extensions: 54952
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)