Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12b02
(855 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 215 5e-56
03_01_0034 + 318432-318825,318902-319851 212 3e-55
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 212 3e-55
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 212 3e-55
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 212 3e-55
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 212 3e-55
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 210 8e-55
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 205 4e-53
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 81 1e-15
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 81 1e-15
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 81 1e-15
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 79 3e-15
05_01_0412 - 3248405-3248458,3248533-3248637,3248950-3249078,324... 38 0.010
02_05_1127 + 34292894-34293284,34293948-34295443 29 3.6
08_02_1050 + 23949828-23949981,23950083-23950534,23951599-239516... 29 4.7
07_03_1027 - 23371826-23372006,23372110-23372171,23372595-233743... 29 6.2
02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622 29 6.2
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 28 8.3
02_05_1298 - 35542250-35542831,35543218-35543410,35543511-355438... 28 8.3
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 215 bits (524), Expect = 5e-56
Identities = 95/105 (90%), Positives = 104/105 (99%)
Frame = -1
Query: 855 MSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKR 676
MS KEVDEQMLN+QNKNSSYFVEWIPNNVK++VCDIPPRGLKMAATF+GNST+IQE+F+R
Sbjct: 321 MSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMAATFVGNSTSIQEMFRR 380
Query: 675 ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 541
+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQY
Sbjct: 381 VSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQY 425
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 212 bits (518), Expect = 3e-55
Identities = 95/105 (90%), Positives = 102/105 (97%)
Frame = -1
Query: 855 MSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKR 676
MS KEVDEQMLN+QNKNSSYFVEWIPNNVK+ VCDIPP GLKMA+TFIGNST+IQE+F+R
Sbjct: 321 MSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRR 380
Query: 675 ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 541
+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 381 VSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 212 bits (518), Expect = 3e-55
Identities = 94/105 (89%), Positives = 103/105 (98%)
Frame = -1
Query: 855 MSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKR 676
MS KEVDEQM+N+QNKNSSYFVEWIPNNVK++VCDIPPRGL MA+TFIGNST+IQE+F+R
Sbjct: 342 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRR 401
Query: 675 ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 541
+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 402 VSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 446
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 212 bits (518), Expect = 3e-55
Identities = 94/105 (89%), Positives = 103/105 (98%)
Frame = -1
Query: 855 MSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKR 676
MS KEVDEQM+N+QNKNSSYFVEWIPNNVK++VCDIPPRGL MA+TFIGNST+IQE+F+R
Sbjct: 321 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRR 380
Query: 675 ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 541
+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 381 VSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 212 bits (517), Expect = 3e-55
Identities = 93/105 (88%), Positives = 103/105 (98%)
Frame = -1
Query: 855 MSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKR 676
MS KEVDEQM+N+QNKNSSYFVEWIPNNVK++VCDIPPRGL MA+TF+GNST+IQE+F+R
Sbjct: 501 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFVGNSTSIQEMFRR 560
Query: 675 ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 541
+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 561 VSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 605
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 212 bits (517), Expect = 3e-55
Identities = 94/105 (89%), Positives = 103/105 (98%)
Frame = -1
Query: 855 MSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKR 676
MS KEVDEQMLN+QNKNSSYFVEWIPNNVK++VCDIPP GLKMA+TFIGNST+IQE+F+R
Sbjct: 321 MSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPNGLKMASTFIGNSTSIQEMFRR 380
Query: 675 ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 541
+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQY
Sbjct: 381 VSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQY 425
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 210 bits (514), Expect = 8e-55
Identities = 94/105 (89%), Positives = 103/105 (98%)
Frame = -1
Query: 855 MSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKR 676
MS KEVDEQMLN+QNKNSSYFVEWIPNNVK++VCDIPP GLKMA+TFIGNST+IQE+F+R
Sbjct: 321 MSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPIGLKMASTFIGNSTSIQEMFRR 380
Query: 675 ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 541
+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQY
Sbjct: 381 VSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQY 425
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 205 bits (500), Expect = 4e-53
Identities = 90/105 (85%), Positives = 101/105 (96%)
Frame = -1
Query: 855 MSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKR 676
MS KEVDEQM+N+QNKNSSYFVEWIPNNVK++VCDIPP GL MA+TF+GNST+IQE+F+R
Sbjct: 337 MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLSMASTFVGNSTSIQEMFRR 396
Query: 675 ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 541
+SEQFTAMFRRKAFLHWYT EGMDEMEFTEAESNMNDLV+EYQQY
Sbjct: 397 VSEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLVAEYQQY 441
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 81.0 bits (191), Expect = 1e-15
Identities = 38/109 (34%), Positives = 62/109 (56%), Gaps = 8/109 (7%)
Frame = -1
Query: 846 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQ 691
K+V+ + I+ K + FV+W P K + PP ++ A I N+TA+
Sbjct: 326 KDVNAAVATIKTKRTVQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVA 385
Query: 690 ELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 544
E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 386 EVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 80.6 bits (190), Expect = 1e-15
Identities = 38/109 (34%), Positives = 62/109 (56%), Gaps = 8/109 (7%)
Frame = -1
Query: 846 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQ 691
K+V+ + I+ K + FV+W P K + PP ++ A I NST++
Sbjct: 326 KDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPSGDLAKVQRAVCMISNSTSVV 385
Query: 690 ELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 544
E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 386 EVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 80.6 bits (190), Expect = 1e-15
Identities = 37/109 (33%), Positives = 63/109 (57%), Gaps = 8/109 (7%)
Frame = -1
Query: 846 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGL--------KMAATFIGNSTAIQ 691
K+V+ + +I+ + + FV+W P K + PP + + A I N+TA+
Sbjct: 407 KDVNAAVHSIKTRRTVQFVDWCPTGFKCGINYQPPTAVPGGDLAKVRRAVCMISNNTAVA 466
Query: 690 ELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 544
E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 467 EVFSRIDRKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 515
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 79.4 bits (187), Expect = 3e-15
Identities = 38/109 (34%), Positives = 62/109 (56%), Gaps = 8/109 (7%)
Frame = -1
Query: 846 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQ 691
K+V+ + I+ K + FV+W P K + PP ++ A I NST++
Sbjct: 326 KDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVV 385
Query: 690 ELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 544
E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 386 EVFSRIDIKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>05_01_0412 -
3248405-3248458,3248533-3248637,3248950-3249078,
3249279-3249353,3249520-3249624,3249714-3249767,
3249970-3250370,3250583-3250694,3250886-3251086,
3251844-3251972
Length = 454
Score = 37.9 bits (84), Expect = 0.010
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Frame = -1
Query: 843 EVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQ 664
+V E + I+ + F+EW P +++ + GL +A N T+I+ LF + Q
Sbjct: 334 QVHESLQRIRERKLVNFIEWGPASIQVS-------GLMLA-----NHTSIRHLFSKCLGQ 381
Query: 663 FTAMFRRKAFLHWYTG----EGMDEMEFTEAESNMNDLVSEYQ 547
+ + +++AFL Y E D EF E+ + LV EY+
Sbjct: 382 YEKLRKKQAFLDNYRKFPMFEDNDLSEFDESREIIESLVDEYK 424
>02_05_1127 + 34292894-34293284,34293948-34295443
Length = 628
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 504 RQTLRPRRRWPPGTVGTRRQG 566
R T +P+RRWPPG+ G +G
Sbjct: 83 RATGQPKRRWPPGSSGGGARG 103
>08_02_1050 +
23949828-23949981,23950083-23950534,23951599-23951631,
23952069-23952179,23953175-23953348
Length = 307
Score = 29.1 bits (62), Expect = 4.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 486 SPAPAPRQTLRPRRRWPP 539
SP+P+P + P RRWPP
Sbjct: 27 SPSPSPLLSRAPSRRWPP 44
>07_03_1027 -
23371826-23372006,23372110-23372171,23372595-23374335,
23374609-23374704,23374967-23375043,23376807-23377307
Length = 885
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 483 RSPAPAPRQTLRPRRRWPPGTVGT 554
R+PAP PR+ +R R R P V T
Sbjct: 31 RAPAPPPREVVRVRLRLTPAPVAT 54
>02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622
Length = 501
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 557 ETRSFMLLSASVNSISSMPSPVYQCKKALRLNIAVNCSEMR 679
E RS LL A N + +P+ + + LN++ N S+MR
Sbjct: 328 EMRSLRLLDAHFNQLRGLPAGIGRLAALESLNLSSNFSDMR 368
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = -3
Query: 763 RRVRHSSSWSQDGRHLHRKLHRHPGAVQAHLG 668
RR H +W +G H R+ H H H G
Sbjct: 565 RRHHHPPAWDVEGHHHDRQQHSHEAGRNHHRG 596
>02_05_1298 -
35542250-35542831,35543218-35543410,35543511-35543827,
35544144-35544186,35545845-35545900,35546028-35546102,
35546249-35546345,35546422-35546546,35547063-35547167,
35547295-35547432,35547758-35547831,35547995-35548065,
35548168-35548363,35548482-35548572,35549264-35549342,
35549431-35549491,35549745-35549814,35549913-35549987,
35550119-35550194,35550403-35550489,35550744-35550880,
35551000-35551063,35551351-35551415
Length = 958
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 578 LSASVNSISSMPSPVYQCKKALRLNIAVN 664
L+AS N+IS +P + C K RLN+ N
Sbjct: 142 LNASNNTISVLPDELAGCSKLFRLNLEGN 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,339,024
Number of Sequences: 37544
Number of extensions: 376254
Number of successful extensions: 1315
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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