Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12b02
(855 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 223 1e-58
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 223 1e-58
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 223 1e-58
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 223 1e-58
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 221 5e-58
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 221 7e-58
Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical p... 131 7e-31
Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical p... 131 7e-31
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 83 3e-16
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 79 3e-15
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 78 9e-15
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 78 9e-15
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 77 1e-14
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 77 1e-14
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 77 1e-14
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 77 1e-14
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 77 2e-14
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 77 2e-14
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 77 2e-14
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 77 2e-14
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 77 2e-14
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 77 2e-14
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 75 9e-14
Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical pr... 69 6e-12
AL023832-1|CAA19475.1| 85|Caenorhabditis elegans Hypothetical ... 62 5e-10
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z93778-7|CAB07847.1| 800|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z81532-9|CAB04328.1| 800|Caenorhabditis elegans Hypothetical pr... 28 7.4
U73476-1|AAB41492.1| 800|Caenorhabditis elegans cyclic nucleoti... 28 7.4
Z81017-3|CAB54257.1| 629|Caenorhabditis elegans Hypothetical pr... 28 9.7
Z81017-2|CAB02672.1| 578|Caenorhabditis elegans Hypothetical pr... 28 9.7
Z81017-1|CAB02669.1| 592|Caenorhabditis elegans Hypothetical pr... 28 9.7
U80221-1|AAB38367.1| 579|Caenorhabditis elegans F58A3.1b protein. 28 9.7
U80220-1|AAB38366.1| 592|Caenorhabditis elegans F58A3.1a protein. 28 9.7
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 223 bits (546), Expect = 1e-58
Identities = 102/105 (97%), Positives = 105/105 (100%)
Frame = -1
Query: 855 MSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKR 676
MSMKEVDEQMLN+QNKNSSYFVEWIPNNVKTAVCDIPPRG+KMAATF+GNSTAIQELFKR
Sbjct: 321 MSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGVKMAATFVGNSTAIQELFKR 380
Query: 675 ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 541
ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 381 ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 223 bits (545), Expect = 1e-58
Identities = 101/105 (96%), Positives = 105/105 (100%)
Frame = -1
Query: 855 MSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKR 676
MSM+EVDEQMLN+QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATF+GNSTAIQELFKR
Sbjct: 321 MSMREVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFVGNSTAIQELFKR 380
Query: 675 ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 541
ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL+SEYQQY
Sbjct: 381 ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQY 425
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 223 bits (545), Expect = 1e-58
Identities = 103/105 (98%), Positives = 105/105 (100%)
Frame = -1
Query: 855 MSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKR 676
MSMKEVDEQMLNIQNKNSSYFV+WIPNNVKTAVCDIPPRGLKM+ATFIGNSTAIQELFKR
Sbjct: 321 MSMKEVDEQMLNIQNKNSSYFVDWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKR 380
Query: 675 ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 541
ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 381 ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 223 bits (545), Expect = 1e-58
Identities = 103/105 (98%), Positives = 105/105 (100%)
Frame = -1
Query: 855 MSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKR 676
MSMKEVDEQMLNIQNKNSSYFV+WIPNNVKTAVCDIPPRGLKM+ATFIGNSTAIQELFKR
Sbjct: 321 MSMKEVDEQMLNIQNKNSSYFVDWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKR 380
Query: 675 ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 541
ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 381 ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 221 bits (540), Expect = 5e-58
Identities = 100/105 (95%), Positives = 105/105 (100%)
Frame = -1
Query: 855 MSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKR 676
MSM+EVDEQML++QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATF+GNSTAIQELFKR
Sbjct: 321 MSMREVDEQMLSVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFVGNSTAIQELFKR 380
Query: 675 ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 541
ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL+SEYQQY
Sbjct: 381 ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQY 425
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 221 bits (539), Expect = 7e-58
Identities = 100/105 (95%), Positives = 105/105 (100%)
Frame = -1
Query: 855 MSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKR 676
MSM+EVD+QM+N+QNKNSSYFVEWIPNNVKTAVCDIPPRGLKM+ATFIGNSTAIQELFKR
Sbjct: 321 MSMREVDDQMMNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKR 380
Query: 675 ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 541
ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 381 ISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425
>Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 131 bits (316), Expect = 7e-31
Identities = 60/102 (58%), Positives = 80/102 (78%)
Frame = -1
Query: 846 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISE 667
K+ EQ+++++N++ S +E +P + T VCDIP RGLK +ATFI NSTAIQE KRIS+
Sbjct: 322 KKDAEQIISVENEDPSEMIESLPKSTNTDVCDIPSRGLKTSATFIANSTAIQEPLKRISK 381
Query: 666 QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 541
QF +FRRKAFLHWYT M+E EFT+AE+ +NDL+SE+QQY
Sbjct: 382 QFAGLFRRKAFLHWYT---MEESEFTDAENKVNDLISEFQQY 420
>Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 131 bits (316), Expect = 7e-31
Identities = 60/102 (58%), Positives = 80/102 (78%)
Frame = -1
Query: 846 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISE 667
K+ EQ+++++N++ S +E +P + T VCDIP RGLK +ATFI NSTAIQE KRIS+
Sbjct: 322 KKDAEQIISVENEDPSEMIESLPKSTNTDVCDIPSRGLKTSATFIANSTAIQEPLKRISK 381
Query: 666 QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 541
QF +FRRKAFLHWYT M+E EFT+AE+ +NDL+SE+QQY
Sbjct: 382 QFAGLFRRKAFLHWYT---MEESEFTDAENKVNDLISEFQQY 420
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 82.6 bits (195), Expect = 3e-16
Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 8/109 (7%)
Frame = -1
Query: 846 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQ 691
KE++ + I+ K + FV+W P K + PP L+ A + N+TAIQ
Sbjct: 326 KEINSAISTIKTKRAIQFVDWCPTGFKVGINYQPPTVVPGGDMAKLQRAVCMLSNTTAIQ 385
Query: 690 ELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 544
E + R+ +F M+ ++AF+HWY GEGM+E EF+EA +M L +Y++
Sbjct: 386 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 79.4 bits (187), Expect = 3e-15
Identities = 37/109 (33%), Positives = 62/109 (56%), Gaps = 8/109 (7%)
Frame = -1
Query: 846 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQ 691
K+V+ + +++ K S FV+W P K + PP L+ A + N+TAI
Sbjct: 331 KDVNAAIASVKTKRSIQFVDWCPTGFKVGINYQPPTVVPGADLSKLQRAVCMLSNTTAIA 390
Query: 690 ELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 544
E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 391 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 439
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 77.8 bits (183), Expect = 9e-15
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 8/109 (7%)
Frame = -1
Query: 846 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQ 691
K+V+ + I+ K S FV+W P K + PP + A + N+TAI
Sbjct: 324 KDVNTAITAIKTKRSVQFVDWCPTGFKVGINYQPPTVVPGGDLAKVPRAVCMLSNTTAIA 383
Query: 690 ELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 544
E + R+ +F M+ ++AF+HWY GEGM+E EFTEA ++ L +Y++
Sbjct: 384 EAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEE 432
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 77.8 bits (183), Expect = 9e-15
Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 8/109 (7%)
Frame = -1
Query: 846 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQ 691
K+V+ + I+ K S FV+W P K + PP + A + N+TAI
Sbjct: 324 KDVNTAITAIKTKRSVQFVDWCPTGFKVGINYQPPTVVPGGDLAKVPRAVCMLSNTTAIA 383
Query: 690 ELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 544
E + R+ +F M+ ++AF+HWY GEGM+E EFTEA ++ L +Y++
Sbjct: 384 EAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEE 432
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 77.4 bits (182), Expect = 1e-14
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 8/109 (7%)
Frame = -1
Query: 846 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQ 691
K+V+ + I+ K S FV+W P K + PP + A + N+TAI
Sbjct: 326 KDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVPRAVCMLSNTTAIA 385
Query: 690 ELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 544
E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 386 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 77.4 bits (182), Expect = 1e-14
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 8/109 (7%)
Frame = -1
Query: 846 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQ 691
K+V+ + I+ K S FV+W P K + PP + A + N+TAI
Sbjct: 325 KDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVPRAVCMLSNTTAIA 384
Query: 690 ELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 544
E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 385 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 433
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 77.4 bits (182), Expect = 1e-14
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 8/109 (7%)
Frame = -1
Query: 846 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQ 691
K+V+ + I+ K S FV+W P K + PP + A + N+TAI
Sbjct: 326 KDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVPRAVCMLSNTTAIA 385
Query: 690 ELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 544
E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 386 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 77.4 bits (182), Expect = 1e-14
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 8/109 (7%)
Frame = -1
Query: 846 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQ 691
K+V+ + I+ K S FV+W P K + PP + A + N+TAI
Sbjct: 326 KDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVPRAVCMLSNTTAIA 385
Query: 690 ELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 544
E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 386 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 76.6 bits (180), Expect = 2e-14
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 8/109 (7%)
Frame = -1
Query: 846 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQ 691
K+V+ + I+ K + FV+W P K + PP + A + N+TAI
Sbjct: 324 KDVNTAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVPRAVCMLSNTTAIA 383
Query: 690 ELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 544
E + R+ +F M+ ++AF+HWY GEGM+E EFTEA ++ L +Y++
Sbjct: 384 EAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEE 432
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 76.6 bits (180), Expect = 2e-14
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 8/109 (7%)
Frame = -1
Query: 846 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLK--------MAATFIGNSTAIQ 691
K+++ + ++ K + FVEW P K + PP + + I N+TAI
Sbjct: 332 KDINSAIAAVKTKRTVQFVEWCPTGFKVGINYQPPTVVPGGDLGKQTRSVCMISNTTAIA 391
Query: 690 ELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 544
E + R+ +F M+ ++AF+HWY GEGM+E EF+EA +M L +Y++
Sbjct: 392 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 440
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 76.6 bits (180), Expect = 2e-14
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 8/109 (7%)
Frame = -1
Query: 846 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQ 691
K+V+ + I+ K + FV+W P K + PP + A + N+TAI
Sbjct: 324 KDVNTAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVPRAVCMLSNTTAIA 383
Query: 690 ELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 544
E + R+ +F M+ ++AF+HWY GEGM+E EFTEA ++ L +Y++
Sbjct: 384 EAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEE 432
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 76.6 bits (180), Expect = 2e-14
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 8/109 (7%)
Frame = -1
Query: 846 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQ 691
K+V+ + I+ K + FV+W P K + PP + A + N+TAI
Sbjct: 324 KDVNTAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVPRAVCMLSNTTAIA 383
Query: 690 ELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 544
E + R+ +F M+ ++AF+HWY GEGM+E EFTEA ++ L +Y++
Sbjct: 384 EAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEE 432
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 76.6 bits (180), Expect = 2e-14
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 8/109 (7%)
Frame = -1
Query: 846 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQ 691
K+V+ + I+ K + FV+W P K + PP + A + N+TAI
Sbjct: 324 KDVNTAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVPRAVCMLSNTTAIA 383
Query: 690 ELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 544
E + R+ +F M+ ++AF+HWY GEGM+E EFTEA ++ L +Y++
Sbjct: 384 EAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEE 432
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 76.6 bits (180), Expect = 2e-14
Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 8/109 (7%)
Frame = -1
Query: 846 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLK--------MAATFIGNSTAIQ 691
K+++ + ++ K + FVEW P K + PP + + I N+TAI
Sbjct: 304 KDINSAIAAVKTKRTVQFVEWCPTGFKVGINYQPPTVVPGGDLGKQTRSVCMISNTTAIA 363
Query: 690 ELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 544
E + R+ +F M+ ++AF+HWY GEGM+E EF+EA +M L +Y++
Sbjct: 364 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 412
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 74.5 bits (175), Expect = 9e-14
Identities = 36/109 (33%), Positives = 61/109 (55%), Gaps = 8/109 (7%)
Frame = -1
Query: 846 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLK--------MAATFIGNSTAIQ 691
K+V + +I+ + S FV+W P K + PP + A + N+TAI
Sbjct: 321 KDVSAAIKSIKTQRSVQFVDWCPTGFKVGLNYQPPTVIPGGDMAKVPRAVCMLSNTTAIA 380
Query: 690 ELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 544
E ++R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 381 EAWQRLDYKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 429
>Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical
protein ZK899.4 protein.
Length = 452
Score = 68.5 bits (160), Expect = 6e-12
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 8/109 (7%)
Frame = -1
Query: 846 KEVDEQMLNIQNKNSSYFVEWIPNNVKTAV---CDIPPRG-----LKMAATFIGNSTAIQ 691
K+V+ + +++ K FV+W P K + I G + A + N+TAI
Sbjct: 329 KDVNAAISSVKAKRGINFVDWCPTGFKVGINYQAPITVEGGDLAKVHRAVCMLSNTTAIA 388
Query: 690 ELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 544
E + R+ +F M+ ++AF+HW+ GEGM+E EF EA ++ L +Y +
Sbjct: 389 EAWARLDHKFDLMYSKRAFVHWFVGEGMEEGEFMEARDDLAALEKDYAE 437
>AL023832-1|CAA19475.1| 85|Caenorhabditis elegans Hypothetical
protein Y19D2B.1 protein.
Length = 85
Score = 62.1 bits (144), Expect = 5e-10
Identities = 24/57 (42%), Positives = 40/57 (70%)
Frame = -1
Query: 714 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 544
+ ++TAI E + R+ +F M+ ++AF+HWY GEGM+E EFTEA ++ L +Y++
Sbjct: 13 LSDTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEE 69
>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical protein
H02I12.1 protein.
Length = 1319
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 116 YLRCNFSSSFCNQCDELLAFSNE 48
YLRC++ +S QC E FSN+
Sbjct: 1126 YLRCSYGASKLQQCSEDRVFSND 1148
>Z93778-7|CAB07847.1| 800|Caenorhabditis elegans Hypothetical
protein F36F2.5 protein.
Length = 800
Score = 28.3 bits (60), Expect = 7.4
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Frame = -1
Query: 756 CDIPPRGLKMAATFIGNST------AIQELFKRISEQFTAMFRRKAFLHWYT--GEGMDE 601
C I PR + T I N T +QEL K I E+ R+ + W T + DE
Sbjct: 683 CKINPRQVPKLITLIANMTEMNENKGVQELKKVIEEETEKSRRQSIYYPWSTLQRDDDDE 742
Query: 600 MEFTEAESNMNDLVSEY 550
E+ + E +++D+ ++
Sbjct: 743 EEWND-EEDLSDVGEDF 758
>Z81532-9|CAB04328.1| 800|Caenorhabditis elegans Hypothetical
protein F36F2.5 protein.
Length = 800
Score = 28.3 bits (60), Expect = 7.4
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Frame = -1
Query: 756 CDIPPRGLKMAATFIGNST------AIQELFKRISEQFTAMFRRKAFLHWYT--GEGMDE 601
C I PR + T I N T +QEL K I E+ R+ + W T + DE
Sbjct: 683 CKINPRQVPKLITLIANMTEMNENKGVQELKKVIEEETEKSRRQSIYYPWSTLQRDDDDE 742
Query: 600 MEFTEAESNMNDLVSEY 550
E+ + E +++D+ ++
Sbjct: 743 EEWND-EEDLSDVGEDF 758
>U73476-1|AAB41492.1| 800|Caenorhabditis elegans cyclic
nucleotide-gated channel protein.
Length = 800
Score = 28.3 bits (60), Expect = 7.4
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Frame = -1
Query: 756 CDIPPRGLKMAATFIGNST------AIQELFKRISEQFTAMFRRKAFLHWYT--GEGMDE 601
C I PR + T I N T +QEL K I E+ R+ + W T + DE
Sbjct: 683 CKINPRQVPKLITLIANMTEMNENKGVQELKKVIEEETEKSRRQSIYYPWSTLQRDDDDE 742
Query: 600 MEFTEAESNMNDLVSEY 550
E+ + E +++D+ ++
Sbjct: 743 EEWND-EEDLSDVGEDF 758
>Z81017-3|CAB54257.1| 629|Caenorhabditis elegans Hypothetical
protein F58A3.1c protein.
Length = 629
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 790 GMDPQQREDRRVRHSSSWSQDGRHLHRKLHRHPGAVQAHLG 668
GM P + HS SQ +H +H PG++Q H G
Sbjct: 477 GMQPPPGQQHMPPHSMG-SQMPTSMHNPMHMPPGSMQGHGG 516
>Z81017-2|CAB02672.1| 578|Caenorhabditis elegans Hypothetical
protein F58A3.1b protein.
Length = 578
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 790 GMDPQQREDRRVRHSSSWSQDGRHLHRKLHRHPGAVQAHLG 668
GM P + HS SQ +H +H PG++Q H G
Sbjct: 426 GMQPPPGQQHMPPHSMG-SQMPTSMHNPMHMPPGSMQGHGG 465
>Z81017-1|CAB02669.1| 592|Caenorhabditis elegans Hypothetical
protein F58A3.1a protein.
Length = 592
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 790 GMDPQQREDRRVRHSSSWSQDGRHLHRKLHRHPGAVQAHLG 668
GM P + HS SQ +H +H PG++Q H G
Sbjct: 440 GMQPPPGQQHMPPHSMG-SQMPTSMHNPMHMPPGSMQGHGG 479
>U80221-1|AAB38367.1| 579|Caenorhabditis elegans F58A3.1b protein.
Length = 579
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 790 GMDPQQREDRRVRHSSSWSQDGRHLHRKLHRHPGAVQAHLG 668
GM P + HS SQ +H +H PG++Q H G
Sbjct: 427 GMQPPPGQQHMPPHSMG-SQMPTSMHNPMHMPPGSMQGHGG 466
>U80220-1|AAB38366.1| 592|Caenorhabditis elegans F58A3.1a protein.
Length = 592
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 790 GMDPQQREDRRVRHSSSWSQDGRHLHRKLHRHPGAVQAHLG 668
GM P + HS SQ +H +H PG++Q H G
Sbjct: 440 GMQPPPGQQHMPPHSMG-SQMPTSMHNPMHMPPGSMQGHGG 479
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,199,268
Number of Sequences: 27780
Number of extensions: 314184
Number of successful extensions: 1096
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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