Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12b02
         (855 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.3  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   8.3  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   8.3  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   8.3  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   8.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 814 EQELLILRGMDPQQREDRRVRHSSSWSQDGRHLHRKLHRH 695
           +Q  L L+    Q  +D    H+S+  + G     K H+H
Sbjct: 93  QQHSLYLQQQQQQHHQDSSSEHASNQERFGYFSSLKDHQH 132


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 383 SYLYSNFNSFRLQHA**NNLGSTRYVAVTGCVYIP 279
           +Y YSN+N++   +   NN    +Y  +     IP
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIP 122


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 383 SYLYSNFNSFRLQHA**NNLGSTRYVAVTGCVYIP 279
           +Y YSN+N++   +   NN    +Y  +     IP
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIP 122


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 383 SYLYSNFNSFRLQHA**NNLGSTRYVAVTGCVYIP 279
           +Y YSN+N++   +   NN    +Y  +     IP
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIP 122


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 383 SYLYSNFNSFRLQHA**NNLGSTRYVAVTGCVYIP 279
           +Y YSN+N++   +   NN    +Y  +     IP
Sbjct: 88  NYKYSNYNNYNNNNYNNNNYKKLQYYNINYIEQIP 122


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 581 SASVNSISSMPSPVYQCKKALR-LNIAVN 664
           +AS NS+ S+P  ++   + LR +++A N
Sbjct: 267 NASYNSLDSLPEGLFASTRDLREIHLAYN 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,101
Number of Sequences: 438
Number of extensions: 4301
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)