Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12a24
(880 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 29 0.87
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 28 1.5
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 28 1.5
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 27 2.7
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 27 2.7
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c... 27 4.7
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 27 4.7
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 26 6.1
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.1
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 26 6.1
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 26 6.1
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 26 6.1
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 26 8.1
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po... 26 8.1
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 29.1 bits (62), Expect = 0.87
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +1
Query: 196 WAFPDQHLA*AQMQMIHYELSDQNLEVLNESRKEVQRILQVSPLKDISILRHGTGCP 366
W +P Q + + + Y L +L LN+ K V V P I IL G P
Sbjct: 241 WIYPHQVVGPPRKRQYFYVLGCSSLSALNQMSKHVDSFSDVYPTCIIHILEKGIWGP 297
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 731 SLVRYIKTSTKMECGFDTFKKYCFDSSFAR 642
++ RY KT T ++CG DT + D +F R
Sbjct: 278 AITRYRKTPTCIQCGADTKGLFSVDKNFDR 307
>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 551
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -1
Query: 505 DLGMKCERDAFDALFDHAPDKLLVVKKSLITFVNKHLSKVNLEVM 371
D+ + ++D L + AP L + KSLIT+ +N+++M
Sbjct: 283 DMFPELQKDIHVTLIEAAPGVLPMFTKSLITYTENLFKNLNIKIM 327
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 448 DKLLVVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLM 323
D L +K L+ N H+ + + L F G YLCL+M
Sbjct: 565 DSLKKIKGLLLEKRNMHIQRYGPNTVKLYYAFDSGDYLCLVM 606
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 433 VKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYL 335
+ KS + F H +KVNLE++ DG Y+
Sbjct: 334 IAKSELEFYGSHKAKVNLEILQRLAHRRDGHYV 366
>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 699 NGVWIRYIQKVLFRFFICS 643
NGVW R IQKV++ + + S
Sbjct: 97 NGVWDRSIQKVVYLYLLAS 115
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 563 VFLDDNNVHRNIFGETYGSSEMTGQSNEQMKNRNNT 670
V ++ NVH NIF E + T Q +Q N T
Sbjct: 21 VDFEELNVHSNIFSELEHAKPSTQQQQQQQNISNET 56
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 448 PVHGRTTHQTRHVHISCRDRHK*SLWFRLKSGEIVGSVC 564
PV G H T+ + +S D +K ++W KS +++ S+C
Sbjct: 55 PVRGIAFHPTQPLFVSGGDDYKVNVW-NYKSRKLLFSLC 92
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 304 FVPLYDFHLTPQDFDQKVHNVSFA 233
F +DF LTP F + +H VSF+
Sbjct: 2057 FETTFDFVLTPAAFSRFLHRVSFS 2080
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 529 ETITTTY-DDLGMKCERDAFDALFDHAP 449
ET+ + Y D+LGM+C F L D AP
Sbjct: 647 ETLRSRYLDELGMRCRNQLFSRL-DQAP 673
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -3
Query: 668 YCFDSSFARCSGPSFPSSHTSPRKCFCERCYRQEKHTDPTISPDF 534
YC + F S+ S T+ + C CY+Q + PT D+
Sbjct: 238 YCCGNKF----NESYYQSQTAQKYNVCISCYQQNRFPSPTTIADY 278
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 617 SHTSPRKCFCERCYRQEKHTDPTISPD 537
S + FCE Y+++K T P+I P+
Sbjct: 46 SDSGKTSLFCELIYKEKKTTVPSIEPN 72
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = +1
Query: 175 RYLQAWLWAFPDQHLA*AQMQMIHYELSDQNLEVLNESRKEVQRILQVSPLKD 333
RY+Q+W A PD + + + ++ L D + E S+ + L D
Sbjct: 117 RYIQSWALAVPDTNSPLSYIIHVYQNLKDGDYEFPEPSQNITSKFLDTETPPD 169
>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 596
Score = 25.8 bits (54), Expect = 8.1
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = -1
Query: 535 LIETITTTYDDLGMKCERDAFD--ALFDHAPDKLL--VVKKSLITFVNKHLSKVNLEVMD 368
L+ T YDD+G + D FD A+F +L + KK + +VN + + LE +
Sbjct: 127 LLRIPTVCYDDMGDVGDDDRFDIFAVFQDKVRELYPNIFKKLKVEYVNTYGLLITLEGSN 186
Query: 367 LD 362
D
Sbjct: 187 KD 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,508,940
Number of Sequences: 5004
Number of extensions: 74266
Number of successful extensions: 191
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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