Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12a24
         (880 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916...    37   0.019
02_05_0544 + 29876337-29876524,29876850-29876882,29878390-298785...    29   3.7  
07_03_0354 - 17109041-17109289,17109423-17109555,17110560-171107...    28   8.6  

>07_03_0603 -
           19890664-19890823,19891104-19891329,19891498-19891636,
           19891849-19891942,19892291-19892311,19892506-19892941,
           19893133-19893280,19893369-19893476,19893543-19893659,
           19893960-19894016,19894488-19894553,19895140-19895328,
           19895410-19895523,19895684-19895766,19895857-19896322,
           19896832-19897476
          Length = 1022

 Score = 37.1 bits (82), Expect = 0.019
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
 Frame = -1

Query: 397 LSKVNLEVMDLDTQFHDGVYLCLLMGLLEEFFVPLYDFHLTPQDFDQKVHNVSFAFELMQ 218
           LS+ +  V +L     DG+ LC ++ LL      +         + +++HN + A + ++
Sbjct: 401 LSEYDFTVGNLFEDLQDGIILCRIIQLLTSDASIILKVIAPSDTYKKRLHNCTMAIQYIK 460

Query: 217 DVGLGKPKA-----RPEDIVNLDLKSTLRVLYNLF 128
             G     A       EDIVN D +  L +L+N+F
Sbjct: 461 QAGFPLSDADGLSISAEDIVNGDKELILALLWNMF 495


>02_05_0544 +
           29876337-29876524,29876850-29876882,29878390-29878577,
           29879755-29879811,29879909-29880061,29880812-29881278,
           29881477-29881635,29881718-29881834,29881966-29882117,
           29883436-29883530,29883619-29884525,29884604-29884688,
           29884775-29884843,29885045-29885224,29885367-29885495
          Length = 992

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 331 LLMGLLEEFFVPLYDFHLTPQDFDQKVHNVSFAF 230
           +L+  ++EF    YDF   P DF  K  NV +AF
Sbjct: 844 MLLAAIDEFHKGTYDFFYLPIDFKNKC-NVGYAF 876


>07_03_0354 -
           17109041-17109289,17109423-17109555,17110560-17110738,
           17111568-17111689,17111813-17111960
          Length = 276

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 620 SSHTSPRKCFCERCYRQEKHT-DPTISP 540
           SS ++PR   CERC R  K    P++SP
Sbjct: 19  SSSSTPRASACERCVRNGKAAYSPSLSP 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,246,362
Number of Sequences: 37544
Number of extensions: 430688
Number of successful extensions: 966
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)