Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12a24
         (880 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical prote...    28   0.43 
DQ013847-1|AAY40256.1|   93|Anopheles gambiae CYP325A3 protein.        25   2.3  
AF269154-1|AAF91399.1|   76|Anopheles gambiae transcription fact...    23   9.3  

>AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical protein
           protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 0.43
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 436 VVKKSLITFVNKHLSKVNLEVMD 368
           VVK+S   F+ KH+ K +L ++D
Sbjct: 10  VVKESFFHFIRKHIPKADLSIVD 32


>DQ013847-1|AAY40256.1|   93|Anopheles gambiae CYP325A3 protein.
          Length = 93

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 766 QKLTI-VLRAVNRVLYGTSKPVPKWSVDSIHSK 671
           QK+ + V R VN +LYG  + + K  +++ HS+
Sbjct: 1   QKMKVKVERVVNPILYGRREKLSKQRLENAHSE 33


>AF269154-1|AAF91399.1|   76|Anopheles gambiae transcription factor
           proboscipedia protein.
          Length = 76

 Score = 23.4 bits (48), Expect = 9.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 385 NLEVMDLDTQFHDGVYLC 332
           N ++++L+ +FH   YLC
Sbjct: 33  NTQLLELEKEFHFNKYLC 50


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 870,506
Number of Sequences: 2352
Number of extensions: 18971
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 94266828
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)