Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12a24
(880 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016687-3|AAC48090.1| 375|Caenorhabditis elegans Paralysed arr... 263 1e-70
Z93398-8|CAJ80823.1| 3424|Caenorhabditis elegans Hypothetical pr... 44 2e-04
Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical pr... 44 2e-04
Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical pr... 44 2e-04
Z93398-5|CAD90186.2| 3436|Caenorhabditis elegans Hypothetical pr... 44 2e-04
Z93398-4|CAH04743.1| 4410|Caenorhabditis elegans Hypothetical pr... 44 2e-04
Z93398-3|CAH04742.1| 3322|Caenorhabditis elegans Hypothetical pr... 44 2e-04
Z93398-2|CAH04741.1| 3323|Caenorhabditis elegans Hypothetical pr... 44 2e-04
Z92788-8|CAJ80815.1| 3424|Caenorhabditis elegans Hypothetical pr... 44 2e-04
Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical pr... 44 2e-04
Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical pr... 44 2e-04
Z92788-5|CAD90175.2| 3436|Caenorhabditis elegans Hypothetical pr... 44 2e-04
Z92788-4|CAH04711.1| 4410|Caenorhabditis elegans Hypothetical pr... 44 2e-04
Z92788-3|CAH04710.1| 3322|Caenorhabditis elegans Hypothetical pr... 44 2e-04
Z92788-2|CAH04709.1| 3323|Caenorhabditis elegans Hypothetical pr... 44 2e-04
AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical ... 44 2e-04
AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical ... 44 2e-04
AL031637-2|CAH04759.1| 4410|Caenorhabditis elegans Hypothetical ... 44 2e-04
AJ505905-1|CAD44516.1| 3522|Caenorhabditis elegans VAB-10B prote... 44 2e-04
AJ505904-1|CAD44515.1| 3436|Caenorhabditis elegans VAB-10A prote... 44 2e-04
AJ505903-1|CAD44514.1| 3436|Caenorhabditis elegans VAB-10A prote... 44 2e-04
AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B prote... 44 2e-04
AJ505815-1|CAD44323.1| 3436|Caenorhabditis elegans VAB-10A prote... 44 2e-04
AF038621-4|AAK71387.2| 1064|Caenorhabditis elegans Hypothetical ... 42 8e-04
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p... 39 0.004
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p... 39 0.004
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin... 39 0.004
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr... 39 0.004
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr... 39 0.004
Z93398-1|CAH04740.1| 3405|Caenorhabditis elegans Hypothetical pr... 33 0.27
Z92788-1|CAH04708.1| 3405|Caenorhabditis elegans Hypothetical pr... 33 0.27
AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical ... 33 0.36
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 32 0.62
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 32 0.62
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 32 0.62
Z73972-3|CAA98259.1| 305|Caenorhabditis elegans Hypothetical pr... 28 7.7
>AF016687-3|AAC48090.1| 375|Caenorhabditis elegans Paralysed arrest
at two-fold protein6 protein.
Length = 375
Score = 263 bits (645), Expect = 1e-70
Identities = 133/253 (52%), Positives = 170/253 (67%)
Frame = -1
Query: 868 EDLYDGQVXXXXXXXXXXXXLDVPEVTQSEEGQRQKLTIVLRAVNRVLYGTSKPVPKWSV 689
EDL+DGQ+ ++VPEV+QSEEGQRQKL IV++ NR+L G + KWS
Sbjct: 125 EDLFDGQIIQKLLEKLEQIRIEVPEVSQSEEGQRQKLQIVVQTANRIL-GQPREQEKWSA 183
Query: 688 DSIHSKSIVSILHLLVALARHFRAPIRLPEXXXXXXXXXXXNTPTQLSHRTLIETITTTY 509
D IH K +I+ LLV LA H+RAP+R P+ +HR + E ITT
Sbjct: 184 DLIHQKDFTAIIQLLVLLALHYRAPVRFPDNVVANVVVAQKEHGQVKTHR-ITEQITTVQ 242
Query: 508 DDLGMKCERDAFDALFDHAPDKLLVVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCL 329
+L K RDAFD LFD+ PDKL VK SL+ F NKHL+K+NLEV DLD QF DGV+L L
Sbjct: 243 TELAPKGTRDAFDTLFDYGPDKLAHVKTSLLAFCNKHLNKINLEVSDLDNQFQDGVFLVL 302
Query: 328 LMGLLEEFFVPLYDFHLTPQDFDQKVHNVSFAFELMQDVGLGKPKARPEDIVNLDLKSTL 149
L+GLLE +FVPLY F+L Q ++KV NV FAF+LM+D GL KP++R +DI N D+KSTL
Sbjct: 303 LVGLLEGYFVPLYHFNLQVQSHEEKVKNVQFAFKLMEDTGLEKPRSRVQDIANGDVKSTL 362
Query: 148 RVLYNLFTKYKNM 110
R+L+ LFTKYK++
Sbjct: 363 RLLHLLFTKYKHI 375
>Z93398-8|CAJ80823.1| 3424|Caenorhabditis elegans Hypothetical
protein ZK1151.1h protein.
Length = 3424
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/107 (26%), Positives = 51/107 (47%)
Frame = -1
Query: 436 VVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEEFFVPLYDFHLTPQDFDQ 257
V KK+ +VNKHLSK + ++ DL DG L L+ L + + +
Sbjct: 40 VQKKTFTKWVNKHLSKTDHKIDDLFVDLRDGYALIALLEALTGERIQKENGYTR----FH 95
Query: 256 KVHNVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLYNLFTKYK 116
++ NV + + ++ + RPEDIV + K TL +++ + ++
Sbjct: 96 RIQNVQYCLDFLKKKNIKLVNIRPEDIVEGNGKLTLGLIWTIILNFQ 142
>Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical
protein ZK1151.1c protein.
Length = 4955
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/107 (26%), Positives = 51/107 (47%)
Frame = -1
Query: 436 VVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEEFFVPLYDFHLTPQDFDQ 257
V KK+ +VNKHLSK + ++ DL DG L L+ L + + +
Sbjct: 40 VQKKTFTKWVNKHLSKTDHKIDDLFVDLRDGYALIALLEALTGERIQKENGYTR----FH 95
Query: 256 KVHNVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLYNLFTKYK 116
++ NV + + ++ + RPEDIV + K TL +++ + ++
Sbjct: 96 RIQNVQYCLDFLKKKNIKLVNIRPEDIVEGNGKLTLGLIWTIILNFQ 142
>Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical
protein ZK1151.1b protein.
Length = 4944
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/107 (26%), Positives = 51/107 (47%)
Frame = -1
Query: 436 VVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEEFFVPLYDFHLTPQDFDQ 257
V KK+ +VNKHLSK + ++ DL DG L L+ L + + +
Sbjct: 40 VQKKTFTKWVNKHLSKTDHKIDDLFVDLRDGYALIALLEALTGERIQKENGYTR----FH 95
Query: 256 KVHNVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLYNLFTKYK 116
++ NV + + ++ + RPEDIV + K TL +++ + ++
Sbjct: 96 RIQNVQYCLDFLKKKNIKLVNIRPEDIVEGNGKLTLGLIWTIILNFQ 142
>Z93398-5|CAD90186.2| 3436|Caenorhabditis elegans Hypothetical
protein ZK1151.1a protein.
Length = 3436
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/107 (26%), Positives = 51/107 (47%)
Frame = -1
Query: 436 VVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEEFFVPLYDFHLTPQDFDQ 257
V KK+ +VNKHLSK + ++ DL DG L L+ L + + +
Sbjct: 40 VQKKTFTKWVNKHLSKTDHKIDDLFVDLRDGYALIALLEALTGERIQKENGYTR----FH 95
Query: 256 KVHNVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLYNLFTKYK 116
++ NV + + ++ + RPEDIV + K TL +++ + ++
Sbjct: 96 RIQNVQYCLDFLKKKNIKLVNIRPEDIVEGNGKLTLGLIWTIILNFQ 142
>Z93398-4|CAH04743.1| 4410|Caenorhabditis elegans Hypothetical
protein ZK1151.1g protein.
Length = 4410
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/107 (26%), Positives = 51/107 (47%)
Frame = -1
Query: 436 VVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEEFFVPLYDFHLTPQDFDQ 257
V KK+ +VNKHLSK + ++ DL DG L L+ L + + +
Sbjct: 40 VQKKTFTKWVNKHLSKTDHKIDDLFVDLRDGYALIALLEALTGERIQKENGYTR----FH 95
Query: 256 KVHNVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLYNLFTKYK 116
++ NV + + ++ + RPEDIV + K TL +++ + ++
Sbjct: 96 RIQNVQYCLDFLKKKNIKLVNIRPEDIVEGNGKLTLGLIWTIILNFQ 142
>Z93398-3|CAH04742.1| 3322|Caenorhabditis elegans Hypothetical
protein ZK1151.1f protein.
Length = 3322
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/107 (26%), Positives = 51/107 (47%)
Frame = -1
Query: 436 VVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEEFFVPLYDFHLTPQDFDQ 257
V KK+ +VNKHLSK + ++ DL DG L L+ L + + +
Sbjct: 40 VQKKTFTKWVNKHLSKTDHKIDDLFVDLRDGYALIALLEALTGERIQKENGYTR----FH 95
Query: 256 KVHNVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLYNLFTKYK 116
++ NV + + ++ + RPEDIV + K TL +++ + ++
Sbjct: 96 RIQNVQYCLDFLKKKNIKLVNIRPEDIVEGNGKLTLGLIWTIILNFQ 142
>Z93398-2|CAH04741.1| 3323|Caenorhabditis elegans Hypothetical
protein ZK1151.1e protein.
Length = 3323
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/107 (26%), Positives = 51/107 (47%)
Frame = -1
Query: 436 VVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEEFFVPLYDFHLTPQDFDQ 257
V KK+ +VNKHLSK + ++ DL DG L L+ L + + +
Sbjct: 40 VQKKTFTKWVNKHLSKTDHKIDDLFVDLRDGYALIALLEALTGERIQKENGYTR----FH 95
Query: 256 KVHNVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLYNLFTKYK 116
++ NV + + ++ + RPEDIV + K TL +++ + ++
Sbjct: 96 RIQNVQYCLDFLKKKNIKLVNIRPEDIVEGNGKLTLGLIWTIILNFQ 142
>Z92788-8|CAJ80815.1| 3424|Caenorhabditis elegans Hypothetical
protein ZK1151.1h protein.
Length = 3424
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/107 (26%), Positives = 51/107 (47%)
Frame = -1
Query: 436 VVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEEFFVPLYDFHLTPQDFDQ 257
V KK+ +VNKHLSK + ++ DL DG L L+ L + + +
Sbjct: 40 VQKKTFTKWVNKHLSKTDHKIDDLFVDLRDGYALIALLEALTGERIQKENGYTR----FH 95
Query: 256 KVHNVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLYNLFTKYK 116
++ NV + + ++ + RPEDIV + K TL +++ + ++
Sbjct: 96 RIQNVQYCLDFLKKKNIKLVNIRPEDIVEGNGKLTLGLIWTIILNFQ 142
>Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical
protein ZK1151.1c protein.
Length = 4955
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/107 (26%), Positives = 51/107 (47%)
Frame = -1
Query: 436 VVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEEFFVPLYDFHLTPQDFDQ 257
V KK+ +VNKHLSK + ++ DL DG L L+ L + + +
Sbjct: 40 VQKKTFTKWVNKHLSKTDHKIDDLFVDLRDGYALIALLEALTGERIQKENGYTR----FH 95
Query: 256 KVHNVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLYNLFTKYK 116
++ NV + + ++ + RPEDIV + K TL +++ + ++
Sbjct: 96 RIQNVQYCLDFLKKKNIKLVNIRPEDIVEGNGKLTLGLIWTIILNFQ 142
>Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical
protein ZK1151.1b protein.
Length = 4944
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/107 (26%), Positives = 51/107 (47%)
Frame = -1
Query: 436 VVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEEFFVPLYDFHLTPQDFDQ 257
V KK+ +VNKHLSK + ++ DL DG L L+ L + + +
Sbjct: 40 VQKKTFTKWVNKHLSKTDHKIDDLFVDLRDGYALIALLEALTGERIQKENGYTR----FH 95
Query: 256 KVHNVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLYNLFTKYK 116
++ NV + + ++ + RPEDIV + K TL +++ + ++
Sbjct: 96 RIQNVQYCLDFLKKKNIKLVNIRPEDIVEGNGKLTLGLIWTIILNFQ 142
>Z92788-5|CAD90175.2| 3436|Caenorhabditis elegans Hypothetical
protein ZK1151.1a protein.
Length = 3436
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/107 (26%), Positives = 51/107 (47%)
Frame = -1
Query: 436 VVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEEFFVPLYDFHLTPQDFDQ 257
V KK+ +VNKHLSK + ++ DL DG L L+ L + + +
Sbjct: 40 VQKKTFTKWVNKHLSKTDHKIDDLFVDLRDGYALIALLEALTGERIQKENGYTR----FH 95
Query: 256 KVHNVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLYNLFTKYK 116
++ NV + + ++ + RPEDIV + K TL +++ + ++
Sbjct: 96 RIQNVQYCLDFLKKKNIKLVNIRPEDIVEGNGKLTLGLIWTIILNFQ 142
>Z92788-4|CAH04711.1| 4410|Caenorhabditis elegans Hypothetical
protein ZK1151.1g protein.
Length = 4410
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/107 (26%), Positives = 51/107 (47%)
Frame = -1
Query: 436 VVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEEFFVPLYDFHLTPQDFDQ 257
V KK+ +VNKHLSK + ++ DL DG L L+ L + + +
Sbjct: 40 VQKKTFTKWVNKHLSKTDHKIDDLFVDLRDGYALIALLEALTGERIQKENGYTR----FH 95
Query: 256 KVHNVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLYNLFTKYK 116
++ NV + + ++ + RPEDIV + K TL +++ + ++
Sbjct: 96 RIQNVQYCLDFLKKKNIKLVNIRPEDIVEGNGKLTLGLIWTIILNFQ 142
>Z92788-3|CAH04710.1| 3322|Caenorhabditis elegans Hypothetical
protein ZK1151.1f protein.
Length = 3322
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/107 (26%), Positives = 51/107 (47%)
Frame = -1
Query: 436 VVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEEFFVPLYDFHLTPQDFDQ 257
V KK+ +VNKHLSK + ++ DL DG L L+ L + + +
Sbjct: 40 VQKKTFTKWVNKHLSKTDHKIDDLFVDLRDGYALIALLEALTGERIQKENGYTR----FH 95
Query: 256 KVHNVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLYNLFTKYK 116
++ NV + + ++ + RPEDIV + K TL +++ + ++
Sbjct: 96 RIQNVQYCLDFLKKKNIKLVNIRPEDIVEGNGKLTLGLIWTIILNFQ 142
>Z92788-2|CAH04709.1| 3323|Caenorhabditis elegans Hypothetical
protein ZK1151.1e protein.
Length = 3323
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/107 (26%), Positives = 51/107 (47%)
Frame = -1
Query: 436 VVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEEFFVPLYDFHLTPQDFDQ 257
V KK+ +VNKHLSK + ++ DL DG L L+ L + + +
Sbjct: 40 VQKKTFTKWVNKHLSKTDHKIDDLFVDLRDGYALIALLEALTGERIQKENGYTR----FH 95
Query: 256 KVHNVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLYNLFTKYK 116
++ NV + + ++ + RPEDIV + K TL +++ + ++
Sbjct: 96 RIQNVQYCLDFLKKKNIKLVNIRPEDIVEGNGKLTLGLIWTIILNFQ 142
>AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical
protein ZK1151.1c protein.
Length = 4955
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/107 (26%), Positives = 51/107 (47%)
Frame = -1
Query: 436 VVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEEFFVPLYDFHLTPQDFDQ 257
V KK+ +VNKHLSK + ++ DL DG L L+ L + + +
Sbjct: 40 VQKKTFTKWVNKHLSKTDHKIDDLFVDLRDGYALIALLEALTGERIQKENGYTR----FH 95
Query: 256 KVHNVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLYNLFTKYK 116
++ NV + + ++ + RPEDIV + K TL +++ + ++
Sbjct: 96 RIQNVQYCLDFLKKKNIKLVNIRPEDIVEGNGKLTLGLIWTIILNFQ 142
>AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical
protein ZK1151.1b protein.
Length = 4944
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/107 (26%), Positives = 51/107 (47%)
Frame = -1
Query: 436 VVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEEFFVPLYDFHLTPQDFDQ 257
V KK+ +VNKHLSK + ++ DL DG L L+ L + + +
Sbjct: 40 VQKKTFTKWVNKHLSKTDHKIDDLFVDLRDGYALIALLEALTGERIQKENGYTR----FH 95
Query: 256 KVHNVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLYNLFTKYK 116
++ NV + + ++ + RPEDIV + K TL +++ + ++
Sbjct: 96 RIQNVQYCLDFLKKKNIKLVNIRPEDIVEGNGKLTLGLIWTIILNFQ 142
>AL031637-2|CAH04759.1| 4410|Caenorhabditis elegans Hypothetical
protein ZK1151.1g protein.
Length = 4410
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/107 (26%), Positives = 51/107 (47%)
Frame = -1
Query: 436 VVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEEFFVPLYDFHLTPQDFDQ 257
V KK+ +VNKHLSK + ++ DL DG L L+ L + + +
Sbjct: 40 VQKKTFTKWVNKHLSKTDHKIDDLFVDLRDGYALIALLEALTGERIQKENGYTR----FH 95
Query: 256 KVHNVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLYNLFTKYK 116
++ NV + + ++ + RPEDIV + K TL +++ + ++
Sbjct: 96 RIQNVQYCLDFLKKKNIKLVNIRPEDIVEGNGKLTLGLIWTIILNFQ 142
>AJ505905-1|CAD44516.1| 3522|Caenorhabditis elegans VAB-10B protein
protein.
Length = 3522
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/107 (26%), Positives = 51/107 (47%)
Frame = -1
Query: 436 VVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEEFFVPLYDFHLTPQDFDQ 257
V KK+ +VNKHLSK + ++ DL DG L L+ L + + +
Sbjct: 40 VQKKTFTKWVNKHLSKTDHKIDDLFVDLRDGYALIALLEALTGERIQKENGYTR----FH 95
Query: 256 KVHNVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLYNLFTKYK 116
++ NV + + ++ + RPEDIV + K TL +++ + ++
Sbjct: 96 RIQNVQYCLDFLKKKNIKLVNIRPEDIVEGNGKLTLGLIWTIILNFQ 142
>AJ505904-1|CAD44515.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/107 (26%), Positives = 51/107 (47%)
Frame = -1
Query: 436 VVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEEFFVPLYDFHLTPQDFDQ 257
V KK+ +VNKHLSK + ++ DL DG L L+ L + + +
Sbjct: 40 VQKKTFTKWVNKHLSKTDHKIDDLFVDLRDGYALIALLEALTGERIQKENGYTR----FH 95
Query: 256 KVHNVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLYNLFTKYK 116
++ NV + + ++ + RPEDIV + K TL +++ + ++
Sbjct: 96 RIQNVQYCLDFLKKKNIKLVNIRPEDIVEGNGKLTLGLIWTIILNFQ 142
>AJ505903-1|CAD44514.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/107 (26%), Positives = 51/107 (47%)
Frame = -1
Query: 436 VVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEEFFVPLYDFHLTPQDFDQ 257
V KK+ +VNKHLSK + ++ DL DG L L+ L + + +
Sbjct: 40 VQKKTFTKWVNKHLSKTDHKIDDLFVDLRDGYALIALLEALTGERIQKENGYTR----FH 95
Query: 256 KVHNVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLYNLFTKYK 116
++ NV + + ++ + RPEDIV + K TL +++ + ++
Sbjct: 96 RIQNVQYCLDFLKKKNIKLVNIRPEDIVEGNGKLTLGLIWTIILNFQ 142
>AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B protein
protein.
Length = 4944
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/107 (26%), Positives = 51/107 (47%)
Frame = -1
Query: 436 VVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEEFFVPLYDFHLTPQDFDQ 257
V KK+ +VNKHLSK + ++ DL DG L L+ L + + +
Sbjct: 40 VQKKTFTKWVNKHLSKTDHKIDDLFVDLRDGYALIALLEALTGERIQKENGYTR----FH 95
Query: 256 KVHNVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLYNLFTKYK 116
++ NV + + ++ + RPEDIV + K TL +++ + ++
Sbjct: 96 RIQNVQYCLDFLKKKNIKLVNIRPEDIVEGNGKLTLGLIWTIILNFQ 142
>AJ505815-1|CAD44323.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/107 (26%), Positives = 51/107 (47%)
Frame = -1
Query: 436 VVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEEFFVPLYDFHLTPQDFDQ 257
V KK+ +VNKHLSK + ++ DL DG L L+ L + + +
Sbjct: 40 VQKKTFTKWVNKHLSKTDHKIDDLFVDLRDGYALIALLEALTGERIQKENGYTR----FH 95
Query: 256 KVHNVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLYNLFTKYK 116
++ NV + + ++ + RPEDIV + K TL +++ + ++
Sbjct: 96 RIQNVQYCLDFLKKKNIKLVNIRPEDIVEGNGKLTLGLIWTIILNFQ 142
>AF038621-4|AAK71387.2| 1064|Caenorhabditis elegans Hypothetical
protein M116.5 protein.
Length = 1064
Score = 41.5 bits (93), Expect = 8e-04
Identities = 26/105 (24%), Positives = 50/105 (47%)
Frame = -1
Query: 430 KKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEEFFVPLYDFHLTPQDFDQKV 251
KK+ +VNKHL+K + ++DL DG L L+ L + + + ++
Sbjct: 42 KKTFTKWVNKHLTKTDHTIVDLFVDLRDGFALIALLEALTGERIQRENGYTR----FHRI 97
Query: 250 HNVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLYNLFTKYK 116
NV + + ++ + RPEDIV + K TL +++ + ++
Sbjct: 98 QNVQYCLDFLKMKNIKLVNIRPEDIVEGNGKLTLGLIWTIILNFQ 142
>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
protein 70, isoform a protein.
Length = 2257
Score = 39.1 bits (87), Expect = 0.004
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 3/127 (2%)
Frame = -1
Query: 487 ERDAFDALFDHAPDKLLVVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEE 308
ER AL D ++ LV KK+ +VN HL +V+ +V DL DG L L+ +L
Sbjct: 27 ERSRIKALAD---ERELVQKKTFTKWVNSHLVRVSCKVQDLYMDMRDGKMLLRLLAVLSG 83
Query: 307 FFVPLYDFHLTPQDFDQKVH---NVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLY 137
+P P ++H NV + +++ + DIV+ + + TL +++
Sbjct: 84 ERLP------KPTPGKMRIHCLENVEKGLQFLRNQHVHLENLGSHDIVDGNSRLTLGLIW 137
Query: 136 NLFTKYK 116
+ +++
Sbjct: 138 TIILRFQ 144
>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
protein 70, isoform b protein.
Length = 2302
Score = 39.1 bits (87), Expect = 0.004
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 3/127 (2%)
Frame = -1
Query: 487 ERDAFDALFDHAPDKLLVVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEE 308
ER AL D ++ LV KK+ +VN HL +V+ +V DL DG L L+ +L
Sbjct: 27 ERSRIKALAD---ERELVQKKTFTKWVNSHLVRVSCKVQDLYMDMRDGKMLLRLLAVLSG 83
Query: 307 FFVPLYDFHLTPQDFDQKVH---NVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLY 137
+P P ++H NV + +++ + DIV+ + + TL +++
Sbjct: 84 ERLP------KPTPGKMRIHCLENVEKGLQFLRNQHVHLENLGSHDIVDGNSRLTLGLIW 137
Query: 136 NLFTKYK 116
+ +++
Sbjct: 138 TIILRFQ 144
>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
protein.
Length = 2257
Score = 39.1 bits (87), Expect = 0.004
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 3/127 (2%)
Frame = -1
Query: 487 ERDAFDALFDHAPDKLLVVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEE 308
ER AL D ++ LV KK+ +VN HL +V+ +V DL DG L L+ +L
Sbjct: 27 ERSRIKALAD---ERELVQKKTFTKWVNSHLVRVSCKVQDLYMDMRDGKMLLRLLAVLSG 83
Query: 307 FFVPLYDFHLTPQDFDQKVH---NVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLY 137
+P P ++H NV + +++ + DIV+ + + TL +++
Sbjct: 84 ERLP------KPTPGKMRIHCLENVEKGLQFLRNQHVHLENLGSHDIVDGNSRLTLGLIW 137
Query: 136 NLFTKYK 116
+ +++
Sbjct: 138 TIILRFQ 144
>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2257
Score = 39.1 bits (87), Expect = 0.004
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 3/127 (2%)
Frame = -1
Query: 487 ERDAFDALFDHAPDKLLVVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEE 308
ER AL D ++ LV KK+ +VN HL +V+ +V DL DG L L+ +L
Sbjct: 27 ERSRIKALAD---ERELVQKKTFTKWVNSHLVRVSCKVQDLYMDMRDGKMLLRLLAVLSG 83
Query: 307 FFVPLYDFHLTPQDFDQKVH---NVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLY 137
+P P ++H NV + +++ + DIV+ + + TL +++
Sbjct: 84 ERLP------KPTPGKMRIHCLENVEKGLQFLRNQHVHLENLGSHDIVDGNSRLTLGLIW 137
Query: 136 NLFTKYK 116
+ +++
Sbjct: 138 TIILRFQ 144
>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2302
Score = 39.1 bits (87), Expect = 0.004
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 3/127 (2%)
Frame = -1
Query: 487 ERDAFDALFDHAPDKLLVVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEE 308
ER AL D ++ LV KK+ +VN HL +V+ +V DL DG L L+ +L
Sbjct: 27 ERSRIKALAD---ERELVQKKTFTKWVNSHLVRVSCKVQDLYMDMRDGKMLLRLLAVLSG 83
Query: 307 FFVPLYDFHLTPQDFDQKVH---NVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLY 137
+P P ++H NV + +++ + DIV+ + + TL +++
Sbjct: 84 ERLP------KPTPGKMRIHCLENVEKGLQFLRNQHVHLENLGSHDIVDGNSRLTLGLIW 137
Query: 136 NLFTKYK 116
+ +++
Sbjct: 138 TIILRFQ 144
>Z93398-1|CAH04740.1| 3405|Caenorhabditis elegans Hypothetical
protein ZK1151.1d protein.
Length = 3405
Score = 33.1 bits (72), Expect = 0.27
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = -1
Query: 436 VVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLL 314
V KK+ +VNKHLSK + ++ DL DG L L+ L
Sbjct: 40 VQKKTFTKWVNKHLSKTDHKIDDLFVDLRDGYALIALLEAL 80
>Z92788-1|CAH04708.1| 3405|Caenorhabditis elegans Hypothetical
protein ZK1151.1d protein.
Length = 3405
Score = 33.1 bits (72), Expect = 0.27
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = -1
Query: 436 VVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLL 314
V KK+ +VNKHLSK + ++ DL DG L L+ L
Sbjct: 40 VQKKTFTKWVNKHLSKTDHKIDDLFVDLRDGYALIALLEAL 80
>AF100673-5|AAC69000.1| 1084|Caenorhabditis elegans Hypothetical
protein Y66H1B.3 protein.
Length = 1084
Score = 32.7 bits (71), Expect = 0.36
Identities = 20/75 (26%), Positives = 35/75 (46%)
Frame = -1
Query: 439 LVVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEEFFVPLYDFHLTPQDFD 260
++ + + +V HL K + L+T F DG+ L L +L V ++ + +
Sbjct: 26 IIQQNTFTRWVKNHLQKAGETIESLETDFSDGLKLIALAQVLSHKNVGKFNKKVAFR--S 83
Query: 259 QKVHNVSFAFELMQD 215
QK+ NVS A Q+
Sbjct: 84 QKLENVSLALNFFQN 98
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical
protein R31.1 protein.
Length = 4063
Score = 31.9 bits (69), Expect = 0.62
Identities = 23/111 (20%), Positives = 54/111 (48%)
Frame = -1
Query: 448 DKLLVVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEEFFVPLYDFHLTPQ 269
+++ + KK+ + N L++ +LE++DL DG+ +LM LLE +
Sbjct: 48 ERVHIQKKTFTKWCNSFLNRASLEIVDLFEDVGDGI---MLMKLLEIISGDKLGKPNRGR 104
Query: 268 DFDQKVHNVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLYNLFTKYK 116
QKV N++ + ++ + EDI++ + + L +++ + +++
Sbjct: 105 MRVQKVENLNKVLDFLKKKKIQLENIGAEDILDRNERLILGLIWTIILRFQ 155
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical
protein R31.1 protein.
Length = 4063
Score = 31.9 bits (69), Expect = 0.62
Identities = 23/111 (20%), Positives = 54/111 (48%)
Frame = -1
Query: 448 DKLLVVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEEFFVPLYDFHLTPQ 269
+++ + KK+ + N L++ +LE++DL DG+ +LM LLE +
Sbjct: 48 ERVHIQKKTFTKWCNSFLNRASLEIVDLFEDVGDGI---MLMKLLEIISGDKLGKPNRGR 104
Query: 268 DFDQKVHNVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLYNLFTKYK 116
QKV N++ + ++ + EDI++ + + L +++ + +++
Sbjct: 105 MRVQKVENLNKVLDFLKKKKIQLENIGAEDILDRNERLILGLIWTIILRFQ 155
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 31.9 bits (69), Expect = 0.62
Identities = 23/111 (20%), Positives = 54/111 (48%)
Frame = -1
Query: 448 DKLLVVKKSLITFVNKHLSKVNLEVMDLDTQFHDGVYLCLLMGLLEEFFVPLYDFHLTPQ 269
+++ + KK+ + N L++ +LE++DL DG+ +LM LLE +
Sbjct: 48 ERVHIQKKTFTKWCNSFLNRASLEIVDLFEDVGDGI---MLMKLLEIISGDKLGKPNRGR 104
Query: 268 DFDQKVHNVSFAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLYNLFTKYK 116
QKV N++ + ++ + EDI++ + + L +++ + +++
Sbjct: 105 MRVQKVENLNKVLDFLKKKKIQLENIGAEDILDRNERLILGLIWTIILRFQ 155
>Z73972-3|CAA98259.1| 305|Caenorhabditis elegans Hypothetical
protein F15H10.6 protein.
Length = 305
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/59 (27%), Positives = 32/59 (54%)
Frame = -1
Query: 238 FAFELMQDVGLGKPKARPEDIVNLDLKSTLRVLYNLFTKYKNMA*LFINHHLIHRMIKK 62
F E+ +DVG + + + + + L L+ TLR L + + ++ + +NH +I IK+
Sbjct: 149 FFNEMWKDVGKLREEVKYDHLEEL-LEQTLRTSLQLLIRNEELSEIILNHPIILSKIKR 206
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,163,396
Number of Sequences: 27780
Number of extensions: 407965
Number of successful extensions: 1097
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -