Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12a24
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    30   0.032
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   0.92 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.8  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   2.8  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   4.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.5  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 29.9 bits (64), Expect = 0.032
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 572  DDNNVHRNIFGETYGSSEMTGQSNEQMKNR 661
            D+N  H +IFG T  ++E+  +S E  +NR
Sbjct: 1109 DENRYHEDIFGITLRTAEVHNRSRETARNR 1138


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
 Frame = -3

Query: 665 CFDSSFARCSGPSFPSSHTS--PRKCFCERCYRQ-EKHTD 555
           C        SG +    H     R+C CE  Y+Q E HT+
Sbjct: 301 CVSGEHLSVSGGALNDCHAEVVARRCLCEYLYKQLELHTE 340


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -3

Query: 722 RYIKTSTKMECGFDTFKKYCFDSSFARCSG 633
           RY+       CG D F +    +S+  C G
Sbjct: 192 RYVPEGNMTACGTDYFNRGLLSASYLVCYG 221


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -3

Query: 722 RYIKTSTKMECGFDTFKKYCFDSSFARCSG 633
           RY+       CG D F +    +S+  C G
Sbjct: 68  RYVPEGNMTACGTDYFNRGLLSASYLVCYG 97


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 315 SKPIKRHKYTPSWNWVSKSITSKFTLLKCLFTN 413
           ++PI  +      NW  K +T   ++  C+F N
Sbjct: 208 TEPIYYNLTMVKLNWPKKRVTKMSSINPCIFDN 240


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 14/60 (23%), Positives = 24/60 (40%)
 Frame = -3

Query: 722 RYIKTSTKMECGFDTFKKYCFDSSFARCSGPSFPSSHTSPRKCFCERCYRQEKHTDPTIS 543
           R + +  +   G    K++   S+   CSG +       PRK    +C   +K   P +S
Sbjct: 265 RQLNSDVQPGHGSPPVKQHRSSSASTTCSGHTVRCFTGGPRKSHESQCPMLQKLEKPVLS 324


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,818
Number of Sequences: 438
Number of extensions: 5335
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)