Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12a23
         (838 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0649 - 18402976-18403220,18403305-18404499                       36   0.040
05_03_0253 - 11014334-11014592,11015061-11015296,11015370-11015870     31   1.5  
03_02_0390 + 8056006-8057502                                           30   2.6  
10_08_0045 + 14407892-14408068,14408759-14408815,14408899-144091...    29   4.6  
07_03_0604 + 19903654-19904598                                         29   4.6  
03_05_0830 + 28034179-28035492                                         28   8.0  

>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 35.9 bits (79), Expect = 0.040
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = -2

Query: 690 VYTFDSAAQASYVFDKSKGDL-ISFDSVDSVLGKVKYVDRNKLGGLFAWEIDADNGDL 520
           +  +D+A+ ASYV   S GD+ ++FD V  V  K+ +  R  L G F W ++ D+ +L
Sbjct: 339 ITAYDNASVASYV---SVGDVWVAFDGVAVVAEKLAFAARCGLLGYFLWPVNYDDANL 393


>05_03_0253 - 11014334-11014592,11015061-11015296,11015370-11015870
          Length = 331

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/72 (27%), Positives = 30/72 (41%)
 Frame = -2

Query: 723 YRQIQKDLNNYVYTFDSAAQASYVFDKSKGDLISFDSVDSVLGKVKYVDRNKLGGLFAWE 544
           YR +  DL  Y  +   AA+  Y      GDL++        GK  +V  +  G L AW 
Sbjct: 62  YRAVAPDLRGYGDSDAPAAELQYTAMHVVGDLVALLDAVVGAGKPVFVVAHDWGALTAWN 121

Query: 543 IDADNGDLLNAM 508
           +     D + A+
Sbjct: 122 LCLFRPDRVRAL 133


>03_02_0390 + 8056006-8057502
          Length = 498

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -3

Query: 218 LGITDHPMTPYLVPLLSFGKASCAFFNKCIPEDVRIVTLNRP 93
           L   DHP  P L   L  G+ +C   + C   D+  V   RP
Sbjct: 157 LSSLDHPFVPTLYARLDAGRYACFLMDYCSGGDLHAVLRRRP 198


>10_08_0045 +
           14407892-14408068,14408759-14408815,14408899-14409125,
           14409271-14409400,14409848-14410051,14410127-14410198,
           14410468-14410608
          Length = 335

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -1

Query: 817 WTGVTNYTNGNY--FFRHWQRAGVGHVGGRCCRLSSNSKRSQQLCVH 683
           W   +  +N ++  + + W  AG   +GG CCR S ++ R     +H
Sbjct: 288 WVECSGISNEDFVSYVKKWHEAGASLIGG-CCRTSPDTIRGISKALH 333


>07_03_0604 + 19903654-19904598
          Length = 314

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = -3

Query: 350 SHAKVVGLTTRVKCRLLRDNNVEDYLKLTPANYH-FTTDQFICNYLGITDHPMTPYLVPL 174
           S  +V+  TT  K RLLR   ++ ++ +    +  F T     NY  + DHP+ P +  L
Sbjct: 209 SDERVIVFTTNYKERLLRPGRMDMHVYMGYCGWEAFKT--LAHNYFLVDDHPLFPEIRQL 266

Query: 173 LSFGKASCA 147
           L+  +A+ A
Sbjct: 267 LAGVEATPA 275


>03_05_0830 + 28034179-28035492
          Length = 437

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 6/117 (5%)
 Frame = -2

Query: 681 FDSAAQASY--VFDKSKGDLISFDSV----DSVLGKVKYVDRNKLGGLFAWEIDADNGDL 520
           FD   QA    V D S G    F+        +L  VK++   KL G +  EI  D G  
Sbjct: 243 FDQRLQAKILNVVDVSYGGENGFNQAIELSAEILANVKFIQEKKLIGKYFEEISQDTGKY 302

Query: 519 LNAMNAQFKLRDEL*KQVSFVCSCY*DVERYKARTSKTHTFTIRNYRHDSAVFGSDF 349
           +  ++   K   E+    + +     DV RY  + S T    I++   +     S+F
Sbjct: 303 VFGVDDTLKTL-EMGAVETLIVWENLDVNRYVLKNSATGETAIKHLNKEQEADQSNF 358


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,958,714
Number of Sequences: 37544
Number of extensions: 483137
Number of successful extensions: 1250
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)