Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12a23
         (838 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF008575-1|AAB87764.1|  525|Anopheles gambiae chitinase protein.       36   0.002
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    25   2.2  
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    24   6.6  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    24   6.6  

>AF008575-1|AAB87764.1|  525|Anopheles gambiae chitinase protein.
          Length = 525

 Score = 35.5 bits (78), Expect = 0.002
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = -2

Query: 768 GNGPVSG-TWEDGVVDYRQIQKDLNNYVYTFDSAAQASYVFDKSKGDLISFDSVDSVLGK 592
           G G V   T E GV+ Y +  + L    +    + +    +       + +D + SV  K
Sbjct: 299 GGGTVGRYTREPGVMGYNEFCEKLATEAWDLRWSEEQQVPYAVRNNQWVGYDDLRSVQLK 358

Query: 591 VKYVDRNKLGGLFAWEIDADN 529
           VKY+    LGG   W ++ D+
Sbjct: 359 VKYLLDQGLGGAMVWSLETDD 379


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 401  RLPLEIIDTILQYLDPISHAKVVGLTTRVKCR 306
            ++P   +D I Q +DP +  KV  +     CR
Sbjct: 959  QVPFRCVDEINQGMDPTNERKVFNMLVEETCR 990



 Score = 24.6 bits (51), Expect = 3.8
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -3

Query: 311 CRLLRDNNVEDYLKLTPANYHFTTDQFIC 225
           C+ L  + V+D+ K+ P      T   +C
Sbjct: 134 CQFLPQDRVQDFTKMNPRELLLNTQSSVC 162


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 408 FCSCALCNARHPNNNCTQMILAFTVH 485
           +  C LCN +HP + C +   A  ++
Sbjct: 341 YLKCPLCNEQHPLHVCERFERASVIN 366


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 413 AKRIRLPLEIIDTILQYLDPISH 345
           AKR RL   ++D+IL+Y  P+ H
Sbjct: 795 AKR-RLLASVVDSILRYAAPVWH 816


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 924,182
Number of Sequences: 2352
Number of extensions: 20280
Number of successful extensions: 35
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 88478514
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)