Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12a23
(838 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY071559-1|AAL49181.1| 462|Drosophila melanogaster RE62779p pro... 43 6e-04
AE013599-3118|AAF46664.2| 462|Drosophila melanogaster CG3986-PA... 43 6e-04
AY051988-1|AAK93412.1| 1013|Drosophila melanogaster LD45559p pro... 41 0.002
AE014296-558|AAF47714.2| 983|Drosophila melanogaster CG1869-PA ... 41 0.002
AY058589-1|AAL13818.1| 484|Drosophila melanogaster LD28264p pro... 40 0.006
AE014296-349|AAF47562.1| 484|Drosophila melanogaster CG2054-PA ... 40 0.006
AY089362-1|AAL90100.1| 470|Drosophila melanogaster AT18578p pro... 38 0.013
AE013599-3117|AAM68191.1| 470|Drosophila melanogaster CG30293-P... 37 0.030
AY069744-1|AAL39889.1| 257|Drosophila melanogaster LP07267p pro... 36 0.091
AE013599-3119|AAF46665.3| 368|Drosophila melanogaster CG10531-P... 36 0.091
AY118784-1|AAM50644.1| 268|Drosophila melanogaster GH13872p pro... 34 0.28
AE013599-3116|AAF46663.2| 476|Drosophila melanogaster CG9357-PA... 34 0.28
BT021372-1|AAX33520.1| 2286|Drosophila melanogaster LP05745p pro... 31 2.0
AY119021-1|AAM50881.1| 688|Drosophila melanogaster LP04696p pro... 31 2.0
AE014134-3630|EAA46011.1| 2286|Drosophila melanogaster CG18140-P... 31 2.0
AJ276482-1|CAB81549.1| 769|Drosophila melanogaster putative Sec... 30 4.5
>AY071559-1|AAL49181.1| 462|Drosophila melanogaster RE62779p
protein.
Length = 462
Score = 42.7 bits (96), Expect = 6e-04
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = -2
Query: 747 TWEDGVVDYRQIQKDLNNYVYTFDSAAQASYVFDKSKGDL-ISFDSVDSVLGKVKYVDRN 571
T E+G + Y +I LNN+ FD A Y F +GD I +D+ +S+ K++ V+
Sbjct: 284 TRENGFLGYHEIC--LNNWQTVFDQENGAPYAF---QGDQWIGYDNPESIQLKMQLVESR 338
Query: 570 KLGGLFAWEIDADN 529
LGG W I+ D+
Sbjct: 339 NLGGAMMWSIETDD 352
>AE013599-3118|AAF46664.2| 462|Drosophila melanogaster CG3986-PA
protein.
Length = 462
Score = 42.7 bits (96), Expect = 6e-04
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = -2
Query: 747 TWEDGVVDYRQIQKDLNNYVYTFDSAAQASYVFDKSKGDL-ISFDSVDSVLGKVKYVDRN 571
T E+G + Y +I LNN+ FD A Y F +GD I +D+ +S+ K++ V+
Sbjct: 284 TRENGFLGYHEIC--LNNWQTVFDQENGAPYAF---QGDQWIGYDNPESIQLKMQLVESR 338
Query: 570 KLGGLFAWEIDADN 529
LGG W I+ D+
Sbjct: 339 NLGGAMMWSIETDD 352
>AY051988-1|AAK93412.1| 1013|Drosophila melanogaster LD45559p
protein.
Length = 1013
Score = 40.7 bits (91), Expect = 0.002
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = -2
Query: 777 SGTGNGPVSGTWEDGVVDYRQI-QKDLNNYVYTFDSAAQASYVFDKSKGDLISFDSVDSV 601
SG G V T E G + Y +I + LN VY +D + Y+ D + + FD ++
Sbjct: 389 SGGGREGVY-TKEGGFLAYYEICEMLLNGAVYVWDDEMKVPYLVDGDQW--VGFDDERAI 445
Query: 600 LGKVKYVDRNKLGGLFAWEIDADN 529
K+ ++ N GG W ID D+
Sbjct: 446 RNKMHWIKSNGFGGAMVWTIDMDD 469
Score = 32.3 bits (70), Expect = 0.85
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = -2
Query: 747 TWEDGVVDYRQIQKDL--NNYVYTFDSAAQASYVFDKSKGDLISFDSVDSVLGKVKYVDR 574
T E G + Y ++ L +N +DS Q + + ++ + FD S+ K +++
Sbjct: 827 TNEAGFLSYYEVCSFLAADNTTLVWDSEQQVPFAYRGNQW--VGFDDERSLKTKTEWLKE 884
Query: 573 NKLGGLFAWEIDADN 529
GG+ W ID D+
Sbjct: 885 QGFGGIMVWSIDMDD 899
>AE014296-558|AAF47714.2| 983|Drosophila melanogaster CG1869-PA
protein.
Length = 983
Score = 40.7 bits (91), Expect = 0.002
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = -2
Query: 777 SGTGNGPVSGTWEDGVVDYRQI-QKDLNNYVYTFDSAAQASYVFDKSKGDLISFDSVDSV 601
SG G V T E G + Y +I + LN VY +D + Y+ D + + FD ++
Sbjct: 389 SGGGREGVY-TKEGGFLAYYEICEMLLNGAVYVWDDEMKVPYLVDGDQW--VGFDDERAI 445
Query: 600 LGKVKYVDRNKLGGLFAWEIDADN 529
K+ ++ N GG W ID D+
Sbjct: 446 RNKMHWIKSNGFGGAMVWTIDMDD 469
Score = 32.3 bits (70), Expect = 0.85
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = -2
Query: 747 TWEDGVVDYRQIQKDL--NNYVYTFDSAAQASYVFDKSKGDLISFDSVDSVLGKVKYVDR 574
T E G + Y ++ L +N +DS Q + + ++ + FD S+ K +++
Sbjct: 827 TNEAGFLSYYEVCSFLAADNTTLVWDSEQQVPFAYRGNQW--VGFDDERSLKTKTEWLKE 884
Query: 573 NKLGGLFAWEIDADN 529
GG+ W ID D+
Sbjct: 885 QGFGGIMVWSIDMDD 899
>AY058589-1|AAL13818.1| 484|Drosophila melanogaster LD28264p
protein.
Length = 484
Score = 39.5 bits (88), Expect = 0.006
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Frame = -2
Query: 783 IFSGTG-NGPVSGTWEDGVVDYRQIQKDLNNYV--YTFDSAAQASYVFDKSKGDL----- 628
+ G G GP T EDG + Y +I + L+N +T + Q S V KS+ ++
Sbjct: 298 VSEGVGFKGPY--TREDGFLGYNEICQTLSNQTSGWTREWDPQTSQVLAKSERNVFTQEI 355
Query: 627 --ISFDSVDSVLGKVKYVDRNKLGGLFAWEIDADN 529
+++DS S+ KV + +L G+ W +D D+
Sbjct: 356 NVVTYDSSRSIANKVLFAMSKRLAGVMVWSVDTDD 390
>AE014296-349|AAF47562.1| 484|Drosophila melanogaster CG2054-PA
protein.
Length = 484
Score = 39.5 bits (88), Expect = 0.006
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Frame = -2
Query: 783 IFSGTG-NGPVSGTWEDGVVDYRQIQKDLNNYV--YTFDSAAQASYVFDKSKGDL----- 628
+ G G GP T EDG + Y +I + L+N +T + Q S V KS+ ++
Sbjct: 298 VSEGVGFKGPY--TREDGFLGYNEICQTLSNQTSGWTREWDPQTSQVLAKSERNVFTQEI 355
Query: 627 --ISFDSVDSVLGKVKYVDRNKLGGLFAWEIDADN 529
+++DS S+ KV + +L G+ W +D D+
Sbjct: 356 NVVTYDSSRSIANKVLFAMSKRLAGVMVWSVDTDD 390
>AY089362-1|AAL90100.1| 470|Drosophila melanogaster AT18578p
protein.
Length = 470
Score = 38.3 bits (85), Expect = 0.013
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = -2
Query: 735 GVVDYRQIQKDLNNYVYTFDSAAQASYVFDKSKGDL-ISFDSVDSVLGKVKYVDRNKLGG 559
G + Y + + + FD A+ Y ++GD +S++S S+ K+ + +KLGG
Sbjct: 290 GFMTYNEWCVQQSKWSRMFDQLAKVPYA---TRGDQWVSYESPRSIWAKMHLLQEHKLGG 346
Query: 558 LFAWEIDADN 529
AW ID D+
Sbjct: 347 AMAWTIDVDD 356
>AE013599-3117|AAM68191.1| 470|Drosophila melanogaster CG30293-PA
protein.
Length = 470
Score = 37.1 bits (82), Expect = 0.030
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = -2
Query: 735 GVVDYRQIQKDLNNYVYTFDSAAQASYVFDKSKGDL-ISFDSVDSVLGKVKYVDRNKLGG 559
G + Y + + + FD A+ Y ++GD +S+++ S+ K+ + +KLGG
Sbjct: 290 GFMTYNEWCVQQSKWSRMFDQLAKVPYA---TRGDQWVSYENPRSIWAKMHLLQEHKLGG 346
Query: 558 LFAWEIDADN 529
AW ID D+
Sbjct: 347 AMAWTIDVDD 356
>AY069744-1|AAL39889.1| 257|Drosophila melanogaster LP07267p
protein.
Length = 257
Score = 35.5 bits (78), Expect = 0.091
Identities = 22/75 (29%), Positives = 39/75 (52%)
Frame = -2
Query: 753 SGTWEDGVVDYRQIQKDLNNYVYTFDSAAQASYVFDKSKGDLISFDSVDSVLGKVKYVDR 574
S T G + Y +I ++ + V+ +D+AA +Y D+ +SFD+V SV K+ +
Sbjct: 166 SYTGSTGYLGYNEICQNNWHTVFDYDNAAPYAYSGDQ----WVSFDNVLSVQYKMDFALS 221
Query: 573 NKLGGLFAWEIDADN 529
L G W ++ D+
Sbjct: 222 KGLAGAMIWSLETDD 236
>AE013599-3119|AAF46665.3| 368|Drosophila melanogaster CG10531-PA
protein.
Length = 368
Score = 35.5 bits (78), Expect = 0.091
Identities = 22/75 (29%), Positives = 39/75 (52%)
Frame = -2
Query: 753 SGTWEDGVVDYRQIQKDLNNYVYTFDSAAQASYVFDKSKGDLISFDSVDSVLGKVKYVDR 574
S T G + Y +I ++ + V+ +D+AA +Y D+ +SFD+V SV K+ +
Sbjct: 277 SYTGSTGYLGYNEICQNNWHTVFDYDNAAPYAYSGDQ----WVSFDNVLSVQYKMDFALS 332
Query: 573 NKLGGLFAWEIDADN 529
L G W ++ D+
Sbjct: 333 KGLAGAMIWSLETDD 347
>AY118784-1|AAM50644.1| 268|Drosophila melanogaster GH13872p
protein.
Length = 268
Score = 33.9 bits (74), Expect = 0.28
Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = -2
Query: 741 EDGVVDYRQIQKDLNNYVYT--FDSAAQASYVFDKSKGDLISFDSVDSVLGKVKYVDRNK 568
E GV+ Y ++ + + +T +++ Q Y + + + + ++ S+ K +YV N
Sbjct: 102 EPGVLGYNELCEMMEREEWTQKWEATQQVPYAYRQRQW--VGYEDPRSLALKAQYVMDNH 159
Query: 567 LGGLFAWEIDADN 529
LGG+ W +++D+
Sbjct: 160 LGGIMIWSLESDD 172
>AE013599-3116|AAF46663.2| 476|Drosophila melanogaster CG9357-PA
protein.
Length = 476
Score = 33.9 bits (74), Expect = 0.28
Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = -2
Query: 741 EDGVVDYRQIQKDLNNYVYT--FDSAAQASYVFDKSKGDLISFDSVDSVLGKVKYVDRNK 568
E GV+ Y ++ + + +T +++ Q Y + + + + ++ S+ K +YV N
Sbjct: 310 EPGVLGYNELCEMMEREEWTQKWEATQQVPYAYRQRQW--VGYEDPRSLALKAQYVMDNH 367
Query: 567 LGGLFAWEIDADN 529
LGG+ W +++D+
Sbjct: 368 LGGIMIWSLESDD 380
>BT021372-1|AAX33520.1| 2286|Drosophila melanogaster LP05745p protein.
Length = 2286
Score = 31.1 bits (67), Expect = 2.0
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = -2
Query: 747 TWEDGVVDYRQI-QKDLNN--YVYTFDSAAQASYVFDKSKGDLISFDSVDSVLGKVKYVD 577
T DG + Y +I +K +N+ V + SY + S IS+D V ++ K +++
Sbjct: 2181 TRADGFLAYYEICEKVVNDDWKVVRDEEGIFGSYAY--SGNQWISYDDVTTIRRKSQFIK 2238
Query: 576 RNKLGGLFAWEIDADN 529
+LGG W +D D+
Sbjct: 2239 SLQLGGGMIWALDLDD 2254
Score = 30.7 bits (66), Expect = 2.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 627 ISFDSVDSVLGKVKYVDRNKLGGLFAWEIDADN 529
+SFD V + K +Y+ LGG W +D D+
Sbjct: 1722 VSFDDVPMIRHKSEYIKAMGLGGAMIWALDLDD 1754
Score = 29.1 bits (62), Expect = 7.9
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 627 ISFDSVDSVLGKVKYVDRNKLGGLFAWEIDADN 529
+S+DS D V K V KLGG W +D D+
Sbjct: 1279 VSYDSPDMVRKKSLLVRSLKLGGGMVWALDLDD 1311
>AY119021-1|AAM50881.1| 688|Drosophila melanogaster LP04696p
protein.
Length = 688
Score = 31.1 bits (67), Expect = 2.0
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = -2
Query: 747 TWEDGVVDYRQI-QKDLNN--YVYTFDSAAQASYVFDKSKGDLISFDSVDSVLGKVKYVD 577
T DG + Y +I +K +N+ V + SY + S IS+D V ++ K +++
Sbjct: 583 TRADGFLAYYEICEKVVNDDWKVVRDEEGIFGSYAY--SGNQWISYDDVTTIRRKSQFIK 640
Query: 576 RNKLGGLFAWEIDADN 529
+LGG W +D D+
Sbjct: 641 SLQLGGGMIWALDLDD 656
Score = 30.7 bits (66), Expect = 2.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 627 ISFDSVDSVLGKVKYVDRNKLGGLFAWEIDADN 529
+SFD V + K +Y+ LGG W +D D+
Sbjct: 124 VSFDDVPMIRHKSEYIKAMGLGGAMIWALDLDD 156
>AE014134-3630|EAA46011.1| 2286|Drosophila melanogaster CG18140-PA
protein.
Length = 2286
Score = 31.1 bits (67), Expect = 2.0
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = -2
Query: 747 TWEDGVVDYRQI-QKDLNN--YVYTFDSAAQASYVFDKSKGDLISFDSVDSVLGKVKYVD 577
T DG + Y +I +K +N+ V + SY + S IS+D V ++ K +++
Sbjct: 2181 TRADGFLAYYEICEKVVNDDWKVVRDEEGIFGSYAY--SGNQWISYDDVTTIRRKSQFIK 2238
Query: 576 RNKLGGLFAWEIDADN 529
+LGG W +D D+
Sbjct: 2239 SLQLGGGMIWALDLDD 2254
Score = 30.7 bits (66), Expect = 2.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 627 ISFDSVDSVLGKVKYVDRNKLGGLFAWEIDADN 529
+SFD V + K +Y+ LGG W +D D+
Sbjct: 1722 VSFDDVPMIRHKSEYIKAMGLGGAMIWALDLDD 1754
Score = 29.1 bits (62), Expect = 7.9
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 627 ISFDSVDSVLGKVKYVDRNKLGGLFAWEIDADN 529
+S+DS D V K V KLGG W +D D+
Sbjct: 1279 VSYDSPDMVRKKSLLVRSLKLGGGMVWALDLDD 1311
>AJ276482-1|CAB81549.1| 769|Drosophila melanogaster putative Sec23
protein protein.
Length = 769
Score = 29.9 bits (64), Expect = 4.5
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Frame = -3
Query: 428 TKRARAKRIRLPLEIIDTILQY---LDPISHAKVVGLTTRVKCRLLRDNNVE-DY-LKLT 264
+ R A R+ +PL + L+ L PI + V L TR CR + + + DY KL
Sbjct: 26 SSRIEASRLVVPLACLYQPLKERPDLPPIQYEPV--LCTRSNCRAILNPLCQVDYRAKLW 83
Query: 263 PANYHFTTDQFICNYLGITDHPMTPYLVP 177
N+ F +QF Y I++ L+P
Sbjct: 84 VCNFCFQRNQFPPQYAAISEQHQPAELIP 112
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,795,098
Number of Sequences: 53049
Number of extensions: 844571
Number of successful extensions: 2522
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2522
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3983256888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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