Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12a19
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    29   1.0  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   3.1  
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    27   3.1  
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    27   4.1  
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    26   5.5  
SPAC1610.02c |||mitochondrial ribosomal protein subunit L1|Schiz...    26   5.5  

>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 118 KLYKIPLITLSFCFYLSFFIPFGDNFIAIITK 213
           K +  PL+ L +C Y+S F+   D F  ++ K
Sbjct: 107 KAWTQPLVFLYYCAYISKFLELTDTFFLVLRK 138


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = +2

Query: 98  LXLFFKSNXIRFL*SHYPFVFIYHSLFLSETIL-LQSLQNSVKREP--ADIQDVFIQSQF 268
           L LFF      F  S++ + F+   + L +T+L L S + + K++   + I+++ +Q++ 
Sbjct: 369 LHLFFSLRHNSFFESYFIYFFLAKLILLKKTVLSLASTEQANKKQKTCSQIEELLLQAEL 428

Query: 269 IRI 277
             I
Sbjct: 429 ANI 431


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 491 CNTDTILCISINSLHYKD-YKRPALANDPASIEMR-FANLYAVTKH 622
           C T  I+C+S +S+HY++ +     AN   +I+     N+ +V +H
Sbjct: 359 CRTVMIVCVSPSSVHYEETHNTLKYANRAKNIKTEVLRNMISVDRH 404


>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 509 LCISINSLHYKDYKRPALANDPASIEMRFANLYAVTKHYRCTVLSK 646
           +C ++  +      +P + N PA++EM   N YA    Y  T +S+
Sbjct: 208 VCEAVKGMWKPSAAQPIIFNLPATVEMSTPNTYADLIEYFSTNISE 253


>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 136 LITLSFCF-YLSFFIPFGDNFIAIITKFS 219
           +I++ F F Y+ FF+P G   + + TKFS
Sbjct: 193 VISIIFSFAYMDFFLPRGGFLVWVETKFS 221


>SPAC1610.02c |||mitochondrial ribosomal protein subunit
           L1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 253

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 354 YIYLLNRHLNCFHRRAVMPSMSKRLHSESLTVPIALSYESSISL 485
           +I  LN+  N       +P  +K L S S++VP   SY  SI+L
Sbjct: 32  FISQLNKKSNFPALAMTVPEATKYLKSVSISVPYVGSYMLSIAL 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,844,230
Number of Sequences: 5004
Number of extensions: 54326
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)