Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12a17
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    29   1.1  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    28   1.5  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    28   1.9  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    28   1.9  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    27   3.4  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    27   4.4  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   4.4  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   5.9  
SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyce...    26   5.9  
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch...    26   7.8  
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   7.8  

>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 559 MFNGIICGSS-HSSELSFKWRPYAFQSFSSSNRGTACKSTRGNGALYKTPKFKN 717
           + +G +  SS HSS    +  P   Q  SSS + TA  +T  NG    TP+  N
Sbjct: 502 LLSGSLANSSEHSSSPRLRGSPIHNQPVSSS-KSTASLNTNNNGLRASTPEMAN 554


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/52 (28%), Positives = 30/52 (57%)
 Frame = -3

Query: 188 DLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKSRQNFLN 33
           +LK++L  IN   +K  + +   +++KSLTKN  E++    R  + R  +++
Sbjct: 638 ELKAQLNAINTLIKKAELVADQ-KQLKSLTKNHQEIEKAIHRKERQRDQYMS 688


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
 Frame = -3

Query: 203  SQSQRDL----KSKLEEINRHKQKITIDSQHFE----KIKSLTKNVNELQNMEKRVMKSR 48
            S+  RDL    +S L +   +K+K+++ S   +    K+ SLTK VNEL     +V +  
Sbjct: 1195 SKKHRDLTFNHESLLRQSASYKEKLSLASSENKDLSNKVSSLTKQVNELSPKASKVPELE 1254

Query: 47   QNFLN 33
            +   N
Sbjct: 1255 RKITN 1259


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 374 NVNANTYRNKNNYFMETVYEQMVAIQMNNN 285
           N  ++TY    N  +ET YE   A Q+NNN
Sbjct: 361 NFPSDTYEGTEN-ILETAYESTTARQVNNN 389


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = -3

Query: 182 KSKLEEINRHKQ---KITIDSQHFEKIKSLTKNVNELQNMEKRVMKSRQN 42
           ++KLEE +  K+    +  +++   K+  L   VNEL+ +EK + KS ++
Sbjct: 839 RTKLEETSFKKKIDDAVLANNEQKLKLTKLNFQVNELEQLEKDINKSSED 888


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
 Frame = -3

Query: 176 KLEEINRHKQKITIDSQHFEKIKSLTKNVNE-------LQNMEKRVMKSRQNFLN 33
           + +++NR   +I I   H EK+K   KN N        LQ   K++ K R N LN
Sbjct: 443 RCDQLNR---EIDILQNHVEKLKMSLKNTNSDITGEDVLQQKLKQLAKDRGNLLN 494


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 188  DLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMK 54
            DL+SKL  ++   + + + S    K  SL    N+L+ +EK V K
Sbjct: 1043 DLQSKLSVVSSEYENLLLISSQTNK--SLEDKTNQLKYIEKNVQK 1085


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/57 (22%), Positives = 25/57 (43%)
 Frame = -3

Query: 683 FPRVDLQAVPRFDDEKLWKAYGRHLKLNSDECDDPQIIPLNMNVKTAYHKMILVKPC 513
           FP++ L+    +   + WK    H +LN        +   N+++   YH +I+   C
Sbjct: 572 FPKLLLKVERIYSQARNWKLNLTHQQLNGTNDTSDLLFHSNVSLHLFYHYLIVKVSC 628


>SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/58 (20%), Positives = 29/58 (50%)
 Frame = -3

Query: 248 SSVYFFKMFSKNYNASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQN 75
           + + F K F++N    ++ R ++  +     H+Q++    +  E+   L+  + +LQN
Sbjct: 103 TEIEFVKAFNENRIKFKAIRAMEDSIAPSRAHRQRLISSIEREEERDPLSPKLTDLQN 160


>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 700 FCTERRFPASICKQCRGLTTKNFGKHTD 617
           FC E   P+S+C+ C+ L     G H D
Sbjct: 227 FCKELGMPSSVCQNCKPLPDFG-GGHPD 253


>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -3

Query: 191 RDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRV 60
           R  K KLEEIN  K KI    +   +  S TKN+ +++   K++
Sbjct: 7   RSQKRKLEEINNQK-KIKTKKKATGQQTSNTKNLRDVKKKGKQL 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,336,015
Number of Sequences: 5004
Number of extensions: 67924
Number of successful extensions: 197
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)