Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12a17
         (850 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023855-1|AAZ86776.1|  489|Drosophila melanogaster IP12823p pro...    30   4.6  
AE014297-3728|AAF56406.1|  972|Drosophila melanogaster CG11847-P...    30   4.6  
AY069231-1|AAL39376.1|  666|Drosophila melanogaster GH27858p pro...    29   6.1  
AE014134-69|AAF51522.2|  666|Drosophila melanogaster CG3345-PA p...    29   6.1  
M19017-1|AAA28425.1| 1134|Drosophila melanogaster protein ( D.me...    29   8.1  
AY047557-1|AAK77289.1|  555|Drosophila melanogaster GH07062p pro...    29   8.1  
AE014297-4717|AAF57127.1| 1315|Drosophila melanogaster CG1744-PA...    29   8.1  
AE014297-2639|AAF55646.2|  555|Drosophila melanogaster CG5555-PA...    29   8.1  

>BT023855-1|AAZ86776.1|  489|Drosophila melanogaster IP12823p
           protein.
          Length = 489

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 16/72 (22%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = -3

Query: 236 FFKMFSKNYNASQSQR-DLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRV 60
           F +   + Y+  +SQ+ D+K+  +E    K+   + + H ++++ LTK V ++   +  +
Sbjct: 322 FMEAVDEFYSTQESQKIDMKTLQQEREALKKLSNVKNDHAKRLEELTK-VQDVDRKKAEL 380

Query: 59  MKSRQNFLNYGI 24
           + S Q+ ++  I
Sbjct: 381 ITSNQSLVDNAI 392


>AE014297-3728|AAF56406.1|  972|Drosophila melanogaster CG11847-PA
           protein.
          Length = 972

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 16/72 (22%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = -3

Query: 236 FFKMFSKNYNASQSQR-DLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRV 60
           F +   + Y+  +SQ+ D+K+  +E    K+   + + H ++++ LTK V ++   +  +
Sbjct: 302 FMEAVDEFYSTQESQKIDMKTLQQEREALKKLSNVKNDHAKRLEELTK-VQDVDRKKAEL 360

Query: 59  MKSRQNFLNYGI 24
           + S Q+ ++  I
Sbjct: 361 ITSNQSLVDNAI 372


>AY069231-1|AAL39376.1|  666|Drosophila melanogaster GH27858p
           protein.
          Length = 666

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 14/37 (37%), Positives = 25/37 (67%)
 Frame = -3

Query: 182 KSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNM 72
           + KL+E  RH++K+ + +  +EK K L +N+  +QNM
Sbjct: 184 RKKLQEQERHERKVHLLNITYEKFKRL-ENLATMQNM 219


>AE014134-69|AAF51522.2|  666|Drosophila melanogaster CG3345-PA
           protein.
          Length = 666

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 14/37 (37%), Positives = 25/37 (67%)
 Frame = -3

Query: 182 KSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNM 72
           + KL+E  RH++K+ + +  +EK K L +N+  +QNM
Sbjct: 184 RKKLQEQERHERKVHLLNITYEKFKRL-ENLATMQNM 219


>M19017-1|AAA28425.1| 1134|Drosophila melanogaster protein (
           D.melanogaster chaoptingene, exon 10. ).
          Length = 1134

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = -3

Query: 194 QRDLKSKLEEINRHKQKITIDSQH----FEKIKSLTKNVNELQNMEKR 63
           Q D+ SKLEEI+     +T  SQH     E ++ L  + N++  +E+R
Sbjct: 571 QGDIHSKLEEISLRFNHLTSISQHTFFDLEALRKLHLDDNKIDKIERR 618


>AY047557-1|AAK77289.1|  555|Drosophila melanogaster GH07062p
           protein.
          Length = 555

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
 Frame = -3

Query: 209 NASQSQRDLKSKLEEI-----NRHKQKITID---SQHFEKIKSLTKNVNELQNMEKRVMK 54
           N   +  D K+++ E+     N  K+K+ ++   +QH  K+K + K +NE + + K +  
Sbjct: 419 NHKATANDAKTEVSELQQLQQNMQKEKVNLERKLAQHTAKLKDVQKQLNEERELSKALQS 478

Query: 53  SRQNF 39
           ++ ++
Sbjct: 479 NQSSW 483


>AE014297-4717|AAF57127.1| 1315|Drosophila melanogaster CG1744-PA
           protein.
          Length = 1315

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = -3

Query: 194 QRDLKSKLEEINRHKQKITIDSQH----FEKIKSLTKNVNELQNMEKR 63
           Q D+ SKLEEI+     +T  SQH     E ++ L  + N++  +E+R
Sbjct: 571 QGDIHSKLEEISLRFNHLTSISQHTFFDLEALRKLHLDDNKIDKIERR 618


>AE014297-2639|AAF55646.2|  555|Drosophila melanogaster CG5555-PA
           protein.
          Length = 555

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
 Frame = -3

Query: 209 NASQSQRDLKSKLEEI-----NRHKQKITID---SQHFEKIKSLTKNVNELQNMEKRVMK 54
           N   +  D K+++ E+     N  K+K+ ++   +QH  K+K + K +NE + + K +  
Sbjct: 419 NHKATANDAKTEVSELQQLQQNMQKEKVNLERKLAQHTAKLKDVQKQLNEERELSKALQS 478

Query: 53  SRQNF 39
           ++ ++
Sbjct: 479 NQSSW 483


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,615,625
Number of Sequences: 53049
Number of extensions: 696557
Number of successful extensions: 1818
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1818
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4065385896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)