Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12a17
         (850 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos...    32   0.59 
AC084197-6|AAO38572.1|  328|Caenorhabditis elegans Serpentine re...    30   1.8  
AF039042-9|AAC48245.1|  431|Caenorhabditis elegans Hypothetical ...    29   3.2  
U23486-4|AAC46776.2|  261|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z70284-14|CAA94285.4|  422|Caenorhabditis elegans Hypothetical p...    29   5.5  
U56963-12|AAB38128.1|  341|Caenorhabditis elegans Serpentine rec...    29   5.5  
AL031634-1|CAA21034.1|  256|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z82058-5|CAI46585.1|  309|Caenorhabditis elegans Hypothetical pr...    28   9.6  
U41278-4|AAK31513.3|  928|Caenorhabditis elegans Hypothetical pr...    28   9.6  

>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
            protein 1 protein.
          Length = 1963

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 13/53 (24%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
 Frame = -3

Query: 200  QSQRDLKSKLEEINRHKQKITIDSQHF-EKIKSLTKNVNELQNMEKRVMKSRQ 45
            ++ RDL+ +LE+  + +QK+ +D  +  +++++L + + ELQ+   +++K ++
Sbjct: 949  ETVRDLEEQLEQEEQARQKLLLDKTNVDQRLRNLEERLVELQDAYDKLLKEKR 1001


>AC084197-6|AAO38572.1|  328|Caenorhabditis elegans Serpentine
           receptor, class v protein25 protein.
          Length = 328

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +3

Query: 561 VQRNNLRVIAFVGIKL*MASVCFPKFFVVKPRHCLQIDAGKRRSVQNA*IQKLIALLQFC 740
           +QRN L  +  VG+   + S+ +   F+   +H  +I     R +  A +Q  I LL F 
Sbjct: 178 IQRNTLMALIVVGLTCALCSISYGALFLFIRKHSNRISKSLSREIHLA-VQVFILLLAFF 236

Query: 741 PI 746
            I
Sbjct: 237 AI 238


>AF039042-9|AAC48245.1|  431|Caenorhabditis elegans Hypothetical
           protein ZK697.2 protein.
          Length = 431

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
 Frame = -3

Query: 404 ICPFNLRHLKNVNANTYR--NKNNYFM 330
           +CPF+L  +K ++ +TYR  N+N+Y M
Sbjct: 201 VCPFDLSDMKPLSYDTYRYKNRNDYTM 227


>U23486-4|AAC46776.2|  261|Caenorhabditis elegans Hypothetical
           protein F07F6.2 protein.
          Length = 261

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/64 (21%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
 Frame = -3

Query: 227 MFSKNYNASQSQRDLKSKLEEINRHKQKITIDSQHFE-KIKSLTKNVNEL-QNMEKRVMK 54
           M  ++++  ++  D+K+K+E+    ++ +  + Q +  +I+ + +    L Q +E++  K
Sbjct: 181 MIEEDWHVKEANEDVKNKIEQEGLKRKDMEFEEQLYHLRIEKVKRREQVLKQKLEEKKAK 240

Query: 53  SRQN 42
            RQN
Sbjct: 241 RRQN 244


>AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical
           protein R06B10.1 protein.
          Length = 1236

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -3

Query: 227 MFSKN--YNASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMK 54
           +FS N   N      DLKS    + +   K+T+D++  + +K L     EL+ M   + K
Sbjct: 649 IFSMNEALNMKLDVNDLKSLCSTVQKEMSKVTLDAKDQQNLKRLATLSAELETMATSLNK 708


>Z70284-14|CAA94285.4|  422|Caenorhabditis elegans Hypothetical
           protein K07F5.14 protein.
          Length = 422

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
 Frame = -3

Query: 218 KNYNASQSQRDLKSKLEEINRHKQKITIDSQHF------EKIKSLTKNVNELQNMEKRVM 57
           K    +QS+ +    +++I +   K+ + ++ F      EKIKSL  N    Q +EK + 
Sbjct: 314 KKIEPTQSKAEPSGNVDKIEKSLLKVKVSTKFFVDPLSDEKIKSLAANFRRTQTVEKVID 373

Query: 56  K 54
           K
Sbjct: 374 K 374


>U56963-12|AAB38128.1|  341|Caenorhabditis elegans Serpentine
           receptor, class v protein33 protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/70 (27%), Positives = 31/70 (44%)
 Frame = +3

Query: 537 VICGFDIHVQRNNLRVIAFVGIKL*MASVCFPKFFVVKPRHCLQIDAGKRRSVQNA*IQK 716
           +I   D+ +QRN L  +  VG+   + S+ +   F    +H   +    RR +  A  Q 
Sbjct: 173 IIADQDV-IQRNTLMALVVVGLTCILCSLAYGALFYYIRKHTAGLSRSLRRELHLA-FQV 230

Query: 717 LIALLQFCPI 746
            + LL F  I
Sbjct: 231 FVLLLAFFAI 240


>AL031634-1|CAA21034.1|  256|Caenorhabditis elegans Hypothetical
           protein Y32B12C.1 protein.
          Length = 256

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -3

Query: 239 YFFKMFSKNYNASQSQ-RDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNE 84
           + F  + KN   ++ +  D K  LEEI R   ++ +  +   K+K+  K   E
Sbjct: 77  FLFCYYKKNIEDTRGRLEDDKETLEEIQRTHDELNVKFEELNKVKTFIKKQKE 129


>Z82058-5|CAI46585.1|  309|Caenorhabditis elegans Hypothetical
           protein T27C5.12 protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
 Frame = +1

Query: 382 CRRLKGQMGCVADK------RFQFNSPSSPPFNLKMALHVSTLSCSC 504
           C+     M CV DK      + Q N   + PF  +M LH +T S +C
Sbjct: 156 CQSCGTNMTCVVDKIYTGLRKIQTNWNGTVPFTDRMILHTATYSWNC 202


>U41278-4|AAK31513.3|  928|Caenorhabditis elegans Hypothetical
           protein F33G12.5 protein.
          Length = 928

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/52 (21%), Positives = 32/52 (61%)
 Frame = -3

Query: 206 ASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKS 51
           A + ++DL+SK E++   + K+  ++++ +  + L +++   + +EKR  ++
Sbjct: 664 AEEERKDLESKQEQLELKETKVPEEAENQQSSRELHEDLWARKELEKRFARA 715


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,556,839
Number of Sequences: 27780
Number of extensions: 387691
Number of successful extensions: 1243
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)