Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12a17
         (850 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    29   0.041
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    24   1.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.6  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   4.7  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    23   4.7  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   6.2  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 29.5 bits (63), Expect = 0.041
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +2

Query: 692 CTKRLNSKIDCTVAVL--SNRRDFCNFETASG 781
           C KR N  IDC   V+    +  FC F TA+G
Sbjct: 474 CNKRCNCDIDCINRVVQRGTKMQFCIFRTANG 505


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 20/72 (27%), Positives = 35/72 (48%)
 Frame = -3

Query: 218 KNYNASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKSRQNF 39
           K Y+ S+ +R+ KS   E +  K + T       K +S  +   E ++ E++++ S  N 
Sbjct: 270 KRYSRSR-EREQKSYKNENSYRKYRET------SKERSRDRTERE-RSKERKIISSLSNN 321

Query: 38  LNYGINNF*IKY 3
            NY  NN+   Y
Sbjct: 322 YNYNNNNYKYNY 333


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 13/56 (23%), Positives = 24/56 (42%)
 Frame = -3

Query: 230 KMFSKNYNASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKR 63
           ++ + N    +S     S   + NRH   + ID +    IKS   +  E+  + K+
Sbjct: 217 RLTNSNSIKHESDNSDYSHTTDENRHSSTLDIDHKMLTPIKSEPIDAYEMHQISKK 272


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 20  YLFRN*ENFVLTS*LFFPY 76
           Y FRN  ++ +T+ LF+PY
Sbjct: 211 YDFRNSRSWRITNNLFYPY 229


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = -3

Query: 152 KQKITIDSQHFEKIKSLTKNVNEL----QNMEKRVMKSRQNFL 36
           K+ I+  S H EK K L    NE+    +  E+R+   R+ +L
Sbjct: 2   KRNISSYSHHDEKFKQLRNEDNEIDLRSRTKEERLQHRREAWL 44


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 586 SHSSELSFKWRPYAFQSFSSSNRGTACKS 672
           +HS ++ ++W+   F   S   R  A KS
Sbjct: 34  AHSMKVIYEWKHIDFDFGSDERRDAAIKS 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,219
Number of Sequences: 438
Number of extensions: 4724
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)