Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12a14
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    29   0.82 
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    29   0.82 
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p...    29   0.82 
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    27   3.3  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    27   4.4  
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   4.4  
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    26   5.8  
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    26   5.8  
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    26   7.7  

>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 19/50 (38%), Positives = 20/50 (40%)
 Frame = -3

Query: 715 NNSLRAKLELGRAVHDTLRCRCVTGTRRRSQQNNCGRRHVRPRLDRRNKL 566
           N  LR  L L    H   RC  VT    R   N C   H  P L +RN L
Sbjct: 3   NTGLRKGLALSPITHLLKRCSSVTDNVHRV--NYCYNYHTVPNLSQRNLL 50


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = -2

Query: 257 EMNCKSKYHLCAVVIRMSSVTKRARAKRIRLPLEIIDTILQYLDPIS 117
           + +C++K  LC   + ++ + +RA    I+  + +ID +LQ+  PIS
Sbjct: 402 QQSCEAKLLLCTRSL-LAHLDERAPVSTIQDDMSVIDDLLQWKGPIS 447


>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 392

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 798 EAQKSLDKIFLMTYDFKGAWSNTDLGYQTTVYAPSWNSEELYTTHYAV 655
           E +KSL K  +  +D  G+     +G      A SWN+E +   H A+
Sbjct: 168 ETKKSLPKQTIHVHDISGSAMIVLIGESQVKSALSWNNETILLIHNAI 215


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 251 SSLSLNCAFIALSKSPLSASISQANKPPNLFRST 352
           ++L L  +F A    PL + +SQ+N PP L  S+
Sbjct: 260 TNLQLAPSFAAPQAHPLPSHLSQSNVPPQLSHSS 293


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = -1

Query: 510 EDGVVDYRQIQKDLNNYVYTFDSAAQASYVFDKSK 406
           E+G+ DY+++ K L  Y+   D      ++F++++
Sbjct: 341 EEGLTDYQRVIKILFEYIRLLDQTNAHKFLFEETR 375


>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 215

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 387 QTKSNRLYFYRKRTTLERRCQTCTHNC*DLFEFDDNLQ 500
           QTK    +   +R  L+ RCQ C H+     + DDNL+
Sbjct: 98  QTKGINEFSKAQRHVLDPRCQICVHS--QRNDGDDNLE 133


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -1

Query: 507 DGVVDYRQIQKDLNNYVYTFDSAAQASYVFDKSKGDLISFDSVDSVL 367
           DG V    +Q+     VY   +A     +FD++   L+  DS D++L
Sbjct: 239 DGAVYVEDVQRTSPILVYRCSNAVNCVQLFDETPLALVCTDSKDAML 285


>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 375 SVLGKVKYVDRNKLGGLFAWEIDADNG 295
           +++GK+ ++DRN+L        DAD+G
Sbjct: 236 AIIGKLDWIDRNQLIDFLLGTQDADSG 262


>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 342 NKLGGLFAWEIDADNGDLLNAMNAQFKLRDEL 247
           N   G   WE+D D  D +    A  +++DE+
Sbjct: 295 NCTNGYLTWELDPDEKDPMGKQEAIAEIQDEI 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,591,767
Number of Sequences: 5004
Number of extensions: 78273
Number of successful extensions: 241
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)