Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12a14
(843 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0649 - 18402976-18403220,18403305-18404499 63 3e-10
05_03_0253 - 11014334-11014592,11015061-11015296,11015370-11015870 31 1.5
08_02_1114 - 24388807-24388932,24390941-24390970,24391044-243911... 29 3.5
06_01_0486 - 3455030-3455770 29 6.1
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 28 8.1
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 28 8.1
03_05_0830 + 28034179-28035492 28 8.1
01_01_0135 + 1231687-1232188,1234489-1234564,1234646-1234743,123... 28 8.1
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 62.9 bits (146), Expect = 3e-10
Identities = 47/176 (26%), Positives = 83/176 (47%), Gaps = 9/176 (5%)
Frame = -1
Query: 789 KSLDKIFLMTYDFKGAWSNTDLGYQTTVYAPSWNSEELYTTHYAVDALLEQGVDPNKIIV 610
+SLD + +M + + + T AP ++ Y+ Y V + L+ GV +K+++
Sbjct: 223 RSLDWVNVMAFGLRPPGAAN--ANATAFDAPLYDRASHYSASYGVVSWLDAGVPASKVVM 280
Query: 609 GVAMYGRGWTGVTNYTNGNYFSGTGNGPVS-GTWEDGVVDYRQIQ-------KDLNNYVY 454
G+ +YGR W +G GP G+ G + Y ++Q + +
Sbjct: 281 GIPLYGRSWFLRNKANSGVGAPVVAAGPKQRGSNATGAMSYAEVQWLAATATRGSRAVIT 340
Query: 453 TFDSAAQASYVFDKSKGDL-ISFDSVDSVLGKVKYVDRNKLGGLFAWEIDADNGDL 289
+D+A+ ASYV S GD+ ++FD V V K+ + R L G F W ++ D+ +L
Sbjct: 341 AYDNASVASYV---SVGDVWVAFDGVAVVAEKLAFAARCGLLGYFLWPVNYDDANL 393
>05_03_0253 - 11014334-11014592,11015061-11015296,11015370-11015870
Length = 331
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/72 (27%), Positives = 30/72 (41%)
Frame = -1
Query: 492 YRQIQKDLNNYVYTFDSAAQASYVFDKSKGDLISFDSVDSVLGKVKYVDRNKLGGLFAWE 313
YR + DL Y + AA+ Y GDL++ GK +V + G L AW
Sbjct: 62 YRAVAPDLRGYGDSDAPAAELQYTAMHVVGDLVALLDAVVGAGKPVFVVAHDWGALTAWN 121
Query: 312 IDADNGDLLNAM 277
+ D + A+
Sbjct: 122 LCLFRPDRVRAL 133
>08_02_1114 -
24388807-24388932,24390941-24390970,24391044-24391100,
24391231-24391393,24391487-24391614,24391697-24391802,
24391912-24391991,24392118-24392215,24392491-24392631,
24392738-24392822,24393556-24393693
Length = 383
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = -1
Query: 684 EELYTTHYAVDALLEQGVDPNKIIVGVAM-YGRGWTGVTNYTNGNYFSGTGNGPVSGTWE 508
++ +T DAL G++ + +IVG+ WTG ++ N + S G +S +E
Sbjct: 39 DDYHTLEQVTDALAHAGLESSNLIVGIDFTKSNEWTGRVSFNNQSLHS---LGHISNPYE 95
Query: 507 DGV 499
+
Sbjct: 96 QAI 98
>06_01_0486 - 3455030-3455770
Length = 246
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +2
Query: 503 PSSHVPDTGPLPVPEK*LPFV*FVTPVQPRPYMATPT 613
PS H P T P P P P+V P P PY+ PT
Sbjct: 73 PSCHPPYTPPTPRPPPTPPYVPSPPPYVP-PYIPPPT 108
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Frame = -3
Query: 691 ELGRAVHDTLRCRCVTGTRRRSQQNNCGRRHVRPRLDRRNKLYE-WQLFFRHW 536
+LG L CRC G R CG R PRL R E W+ W
Sbjct: 134 DLGAVYRRRLECRCGGGGGRLDLGAGCGPRRDAPRLVGRAVRQEVWEYEGGEW 186
>04_04_1263 - 32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 660 RNVSCTALPSSNLARRLLFGSPNPCL 737
RN SCTA +NL L G P+ CL
Sbjct: 1074 RNCSCTAYAYANLRTILTTGDPSRCL 1099
>03_05_0830 + 28034179-28035492
Length = 437
Score = 28.3 bits (60), Expect = 8.1
Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 6/117 (5%)
Frame = -1
Query: 450 FDSAAQASY--VFDKSKGDLISFDSV----DSVLGKVKYVDRNKLGGLFAWEIDADNGDL 289
FD QA V D S G F+ +L VK++ KL G + EI D G
Sbjct: 243 FDQRLQAKILNVVDVSYGGENGFNQAIELSAEILANVKFIQEKKLIGKYFEEISQDTGKY 302
Query: 288 LNAMNAQFKLRDEL*KQVSFVCSCY*DVERYKARTSKTHTFTIRNYRHDSAVFGSDF 118
+ ++ K E+ + + DV RY + S T I++ + S+F
Sbjct: 303 VFGVDDTLKTL-EMGAVETLIVWENLDVNRYVLKNSATGETAIKHLNKEQEADQSNF 358
>01_01_0135 +
1231687-1232188,1234489-1234564,1234646-1234743,
1234841-1235355
Length = 396
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 756 DFKGAWSNTDLGYQTTVYAPSWNSEELYTTHYAVDALLEQGV 631
DF+ + N+D+ Y P L TTHY D ++E GV
Sbjct: 274 DFRNSTVNSDMRYMEWDDPPQMEPHFLNTTHY--DEIVESGV 313
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,469,957
Number of Sequences: 37544
Number of extensions: 528505
Number of successful extensions: 1486
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1485
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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