Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12a14
(843 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF008575-1|AAB87764.1| 525|Anopheles gambiae chitinase protein. 60 8e-11
AY496420-1|AAS80137.1| 447|Anopheles gambiae bacteria responsiv... 35 0.004
AJ515150-1|CAD56157.2| 737|Anopheles gambiae acetylcholinestera... 26 1.6
AJ515149-1|CAD56156.1| 737|Anopheles gambiae acetylcholinestera... 26 1.6
AJ488492-1|CAD32684.2| 623|Anopheles gambiae acetylcholinestera... 26 1.6
AY496421-1|AAS80138.1| 439|Anopheles gambiae bacteria responsiv... 25 2.2
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein. 25 2.2
EF382662-1|ABN54495.1| 178|Anopheles gambiae CPF family cuticle... 24 6.7
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos... 24 6.7
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript... 24 6.7
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein. 23 8.8
>AF008575-1|AAB87764.1| 525|Anopheles gambiae chitinase protein.
Length = 525
Score = 60.1 bits (139), Expect = 8e-11
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 5/169 (2%)
Frame = -1
Query: 789 KSLDKIFLMTYDFKGAWSNTDLGYQTTVYAPSWNSEELY---TTHYAVDALLEQGVDPNK 619
KS + +M YD GAW + G +Y S ++ + + ++ L QG K
Sbjct: 213 KSFHFLNVMVYDMHGAWDSY-CGINAPLYRGSADTTDRLGQINVNASIHFWLAQGCTGRK 271
Query: 618 IIVGVAMYGRGWTGVTNYTNGNYFSGTGNGPVSG--TWEDGVVDYRQIQKDLNNYVYTFD 445
+++G+ +YGR +T + + N + T G G T E GV+ Y + + L +
Sbjct: 272 LVLGIPLYGRNFT-LASAANTQIGAPTVGGGTVGRYTREPGVMGYNEFCEKLATEAWDLR 330
Query: 444 SAAQASYVFDKSKGDLISFDSVDSVLGKVKYVDRNKLGGLFAWEIDADN 298
+ + + + +D + SV KVKY+ LGG W ++ D+
Sbjct: 331 WSEEQQVPYAVRNNQWVGYDDLRSVQLKVKYLLDQGLGGAMVWSLETDD 379
>AY496420-1|AAS80137.1| 447|Anopheles gambiae bacteria responsive
protein 1 protein.
Length = 447
Score = 34.7 bits (76), Expect = 0.004
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = -1
Query: 786 SLDKIFLMTYDFKGAWSNTDLG-YQTTVYAPSWNSEELYTTHY--AVDALLEQGVDPNKI 616
++D + + YD + N G Y +Y P+ E + + V A QG +KI
Sbjct: 244 NIDYVNVAAYDQQTPERNPKEGDYTAPIYEPT---ERVVGNNVDDKVKAWHSQGTPLDKI 300
Query: 615 IVGVAMYGRGW 583
+VG+A YGRGW
Sbjct: 301 VVGIATYGRGW 311
>AJ515150-1|CAD56157.2| 737|Anopheles gambiae acetylcholinesterase
protein.
Length = 737
Score = 25.8 bits (54), Expect = 1.6
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -1
Query: 585 WTGVTNYTNGNYFSGTGNGPVSGTWEDGVVDYRQIQKDLNNYVYT 451
WTGV + NY G P G ED R+I + +N+ T
Sbjct: 595 WTGVMHGDEINYVFGEPLNPTLGYTEDEKDFSRKIMRYWSNFAKT 639
>AJ515149-1|CAD56156.1| 737|Anopheles gambiae acetylcholinesterase
protein.
Length = 737
Score = 25.8 bits (54), Expect = 1.6
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -1
Query: 585 WTGVTNYTNGNYFSGTGNGPVSGTWEDGVVDYRQIQKDLNNYVYT 451
WTGV + NY G P G ED R+I + +N+ T
Sbjct: 595 WTGVMHGDEINYVFGEPLNPTLGYTEDEKDFSRKIMRYWSNFAKT 639
>AJ488492-1|CAD32684.2| 623|Anopheles gambiae acetylcholinesterase
protein.
Length = 623
Score = 25.8 bits (54), Expect = 1.6
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -1
Query: 585 WTGVTNYTNGNYFSGTGNGPVSGTWEDGVVDYRQIQKDLNNYVYT 451
WTGV + NY G P G ED R+I + +N+ T
Sbjct: 481 WTGVMHGDEINYVFGEPLNPTLGYTEDEKDFSRKIMRYWSNFAKT 525
>AY496421-1|AAS80138.1| 439|Anopheles gambiae bacteria responsive
protein 2 protein.
Length = 439
Score = 25.4 bits (53), Expect = 2.2
Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 21/137 (15%)
Frame = -1
Query: 645 LEQGVDPNKIIVGVAMYGRGW--TGVTNYTNGNYFSGTG-NGPVSGTWEDGVVDYRQIQK 475
L +K+IV + +GRGW G + T G + P T +G + ++
Sbjct: 283 LTNNAPASKLIVSIPTFGRGWKMNGDSGITGVPPLPADGPSNPGPQTQTEGFYSWAEVCA 342
Query: 474 DLNNYVYTFDSAAQA-------------SYVF-----DKSKGDLISFDSVDSVLGKVKYV 349
L N T A A SY F + G +S++ D+ K YV
Sbjct: 343 MLPNPSNTALKGADAPLRKVGDPTKRFGSYAFRLPDSNGEHGVWVSYEDPDTAGNKAGYV 402
Query: 348 DRNKLGGLFAWEIDADN 298
LGG+ ++ D+
Sbjct: 403 KAKNLGGIAINDLSYDD 419
>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
Length = 1036
Score = 25.4 bits (53), Expect = 2.2
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -2
Query: 170 RLPLEIIDTILQYLDPISHAKVVGLTTRVKCR 75
++P +D I Q +DP + KV + CR
Sbjct: 959 QVPFRCVDEINQGMDPTNERKVFNMLVEETCR 990
>EF382662-1|ABN54495.1| 178|Anopheles gambiae CPF family cuticle
protein protein.
Length = 178
Score = 23.8 bits (49), Expect = 6.7
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Frame = +1
Query: 517 ARHRPVASAGKIVAIRI-ICY----AGPAAAVHGDAHNYFVGIDALF 642
A H P+ A A + Y A P AAVHG + F G+ A +
Sbjct: 130 AAHAPIVKAAYPAAYAAPLAYKTPLAAPVAAVHGGSVVQFAGLGASY 176
>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
polyprotein protein.
Length = 1726
Score = 23.8 bits (49), Expect = 6.7
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +3
Query: 177 FCSCALCNARHPNNNCTQMILAFTVH 254
+ C LCN +HP + C + A ++
Sbjct: 341 YLKCPLCNEQHPLHVCERFERASVIN 366
>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
protein.
Length = 1173
Score = 23.8 bits (49), Expect = 6.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 182 AKRIRLPLEIIDTILQYLDPISH 114
AKR RL ++D+IL+Y P+ H
Sbjct: 795 AKR-RLLASVVDSILRYAAPVWH 816
>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
Length = 1356
Score = 23.4 bits (48), Expect = 8.8
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3
Query: 637 RRRSQQNNCGRRHVRPRLDRR 575
R QQNN R H PR D+R
Sbjct: 338 RSFKQQNNEARAHHLPRSDQR 358
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 924,135
Number of Sequences: 2352
Number of extensions: 20892
Number of successful extensions: 49
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 89305416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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