Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12a14
         (843 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   2.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   4.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.2  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   6.2  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 13/87 (14%)
 Frame = -1

Query: 828 YDKIAVVNYAEAQKSLDKIFLMTYDF-----------KGAWSNTDLGYQTTVYAPSWNSE 682
           +D   +VN       + K F  TY++           KG  ++  L   TT+    W ++
Sbjct: 238 FDNATIVNNGPEAAKMAKAFTYTYNYSMYWGQGHAILKGLKTSIILMNGTTLPQIMWGTK 297

Query: 681 E--LYTTHYAVDALLEQGVDPNKIIVG 607
           E    T  Y V+ +LE G   N  + G
Sbjct: 298 ETSTRTDAYTVEIVLEPGTGINVTLKG 324


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 45  IIFNVVVAQKSAFYT 89
           I+FN+ + +K+ FYT
Sbjct: 226 IVFNITLRRKTLFYT 240


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +1

Query: 100 PTTFACEIGSKYCRIVSIISNGKRMRFARA 189
           P TF C +     + VS + +GK +    A
Sbjct: 324 PATFTCNVRGNPIKTVSWLKDGKPLGLEEA 353


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 621 CWDRRLVPVTHRQRNVSC 674
           C   R+  V HRQ  V C
Sbjct: 171 CQRERVASVVHRQETVDC 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,496
Number of Sequences: 438
Number of extensions: 5476
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)