Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12a12
         (770 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    25   3.4  
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    24   6.0  
AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    23   7.9  
AY500851-1|AAS77205.1|  605|Anopheles gambiae G-protein coupled ...    23   7.9  

>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
            channel alpha1 subunit protein.
          Length = 1893

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 152  YSFIVLLSMNTVTL*NKKHHENLIQSQISDL 244
            Y   VL+ +NT+TL  K + +  I +++ DL
Sbjct: 1179 YMIFVLIMINTITLSMKFYRQPEIYTEVLDL 1209


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
            transcription factor FRU-MA protein.
          Length = 960

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +2

Query: 188  TL*NKKHHENLIQSQISDLTYCDQVWLKIRFLST--GVRDLGLHDRLWGHRGHL 343
            T+ N+ HH N+ + Q  +   C Q + +   +     V+   L DR + H  H+
Sbjct: 907  TVSNRWHHANIHRPQSHECPVCGQKFTRRDNMKAHCKVKHPELRDRFYNHIVHM 960


>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 422 RSTKSLKADCLEVDDIGYCS 481
           RS+KSL A+ L++DD   C+
Sbjct: 359 RSSKSLLANVLDIDDDFRCN 378


>AY500851-1|AAS77205.1|  605|Anopheles gambiae G-protein coupled
           receptor 3 protein.
          Length = 605

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 632 HETVTIELKNGSVVHGTITG 573
           H++ T+ L NG+ V+GT  G
Sbjct: 540 HDSGTLPLGNGTTVNGTAHG 559


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 672,554
Number of Sequences: 2352
Number of extensions: 12727
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 80249979
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)