Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12a12
         (770 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071359-1|AAL48981.1|  124|Drosophila melanogaster RE39488p pro...   130   2e-30
AE014296-2169|AAF49893.1|  124|Drosophila melanogaster CG10753-P...   130   3e-30
AE014296-2128|AAF49929.1|   95|Drosophila melanogaster CG10418-P...    36   0.081
AY113465-1|AAM29470.1|  151|Drosophila melanogaster RE39820p pro...    35   0.14 
AF038598-1|AAB92621.1|  151|Drosophila melanogaster small nuclea...    35   0.14 
AE013599-1407|AAF58566.1|  151|Drosophila melanogaster CG8427-PA...    35   0.14 
BT001620-1|AAN71375.1|  154|Drosophila melanogaster RE35747p pro...    34   0.19 
AE014134-1871|AAF52938.3|  154|Drosophila melanogaster CG17768-P...    34   0.19 
AY113474-1|AAM29479.1|   79|Drosophila melanogaster RE43665p pro...    32   1.0  
AE013599-3092|AAF46645.1|   79|Drosophila melanogaster CG9344-PA...    32   1.0  

>AY071359-1|AAL48981.1|  124|Drosophila melanogaster RE39488p
           protein.
          Length = 124

 Score =  130 bits (314), Expect = 2e-30
 Identities = 63/86 (73%), Positives = 71/86 (82%)
 Frame = -1

Query: 665 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 486
           MKLVRFLMKLSHETVTIELKNG+ +HGTITGVDVAMNTHLK+V++T+KNR+ + LETLSI
Sbjct: 1   MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDHVHLETLSI 60

Query: 485 RGNNIRYHXXXXXXXXXXXLIDDTPK 408
           RGNNIRY            LIDDTPK
Sbjct: 61  RGNNIRYFILPDSLPLETLLIDDTPK 86


>AE014296-2169|AAF49893.1|  124|Drosophila melanogaster CG10753-PA
           protein.
          Length = 124

 Score =  130 bits (313), Expect = 3e-30
 Identities = 63/86 (73%), Positives = 71/86 (82%)
 Frame = -1

Query: 665 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 486
           MKLVRFLMKLSHETVTIELKNG+ +HGTITGVDVAMNTHLK+V++T+KNR+ + LETLSI
Sbjct: 1   MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSI 60

Query: 485 RGNNIRYHXXXXXXXXXXXLIDDTPK 408
           RGNNIRY            LIDDTPK
Sbjct: 61  RGNNIRYFILPDSLPLETLLIDDTPK 86


>AE014296-2128|AAF49929.1|   95|Drosophila melanogaster CG10418-PA
           protein.
          Length = 95

 Score = 35.5 bits (78), Expect = 0.081
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = -1

Query: 665 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNR--EELQLETL 492
           M    F   L  + V +ELKN   + GT+  VD  +N  L  + VT  ++    L ++  
Sbjct: 1   MLFYSFFKSLVGKEVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNC 60

Query: 491 SIRGNNIRY 465
            IRG+ +RY
Sbjct: 61  FIRGSVVRY 69


>AY113465-1|AAM29470.1|  151|Drosophila melanogaster RE39820p
           protein.
          Length = 151

 Score = 34.7 bits (76), Expect = 0.14
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = -1

Query: 656 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 477
           ++ L +     +T E   G V  G +   +  MN  +  + VT ++     LE + IRG+
Sbjct: 7   IKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRGS 66

Query: 476 NIRY 465
            IR+
Sbjct: 67  KIRF 70


>AF038598-1|AAB92621.1|  151|Drosophila melanogaster small nuclear
           ribonucleoproteinSm D3 protein.
          Length = 151

 Score = 34.7 bits (76), Expect = 0.14
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = -1

Query: 656 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 477
           ++ L +     +T E   G V  G +   +  MN  +  + VT ++     LE + IRG+
Sbjct: 7   IKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRGS 66

Query: 476 NIRY 465
            IR+
Sbjct: 67  KIRF 70


>AE013599-1407|AAF58566.1|  151|Drosophila melanogaster CG8427-PA
           protein.
          Length = 151

 Score = 34.7 bits (76), Expect = 0.14
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = -1

Query: 656 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 477
           ++ L +     +T E   G V  G +   +  MN  +  + VT ++     LE + IRG+
Sbjct: 7   IKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRGS 66

Query: 476 NIRY 465
            IR+
Sbjct: 67  KIRF 70


>BT001620-1|AAN71375.1|  154|Drosophila melanogaster RE35747p
           protein.
          Length = 154

 Score = 34.3 bits (75), Expect = 0.19
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -1

Query: 617 IELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNIRY 465
           +ELKNG   +G +   D  MN +L+ V  T K+ +   ++    IRG+ I+Y
Sbjct: 17  VELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKY 68


>AE014134-1871|AAF52938.3|  154|Drosophila melanogaster CG17768-PA,
           isoform A protein.
          Length = 154

 Score = 34.3 bits (75), Expect = 0.19
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -1

Query: 617 IELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNIRY 465
           +ELKNG   +G +   D  MN +L+ V  T K+ +   ++    IRG+ I+Y
Sbjct: 17  VELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKY 68


>AY113474-1|AAM29479.1|   79|Drosophila melanogaster RE43665p
           protein.
          Length = 79

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = -1

Query: 674 SSRMKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLET 495
           S +  L +F+ ++    V ++L NG    G +  +D  MN  L+  +  +  + + +   
Sbjct: 2   SRKEALSQFINQIHGRPVAVKLNNGVDYRGVLACLDGYMNICLEQTEEYVNGQLKNKYGD 61

Query: 494 LSIRGNNIRY 465
             IRGNN+ Y
Sbjct: 62  AFIRGNNVLY 71


>AE013599-3092|AAF46645.1|   79|Drosophila melanogaster CG9344-PA
           protein.
          Length = 79

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = -1

Query: 674 SSRMKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLET 495
           S +  L +F+ ++    V ++L NG    G +  +D  MN  L+  +  +  + + +   
Sbjct: 2   SRKEALSQFINQIHGRPVAVKLNNGVDYRGVLACLDGYMNICLEQTEEYVNGQLKNKYGD 61

Query: 494 LSIRGNNIRY 465
             IRGNN+ Y
Sbjct: 62  AFIRGNNVLY 71


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,940,109
Number of Sequences: 53049
Number of extensions: 506518
Number of successful extensions: 1340
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3561257073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)