Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12a11
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1164 + 28104181-28104272,28104359-28104989                       29   3.8  
01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036           29   3.8  
02_05_0031 - 25215587-25216145,25218108-25218133,25218262-252184...    29   5.0  
09_06_0309 - 22206812-22206884,22207008-22207103,22207531-222076...    28   8.7  

>06_03_1164 + 28104181-28104272,28104359-28104989
          Length = 240

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 346 REISLNYYNGWSRTWAPVHSASLLPVYCQR 257
           R + L   NGW R WA   S +++ V C R
Sbjct: 138 RGLELAVRNGWRRVWAEGDSKAVVDVVCDR 167


>01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036
          Length = 1011

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 129 FFRGFPIGLGLTVITVALDKFMGGGEXWAWSRARGRAID 13
           F  G+ I  G  V   A + F+GGG  W    A G+ ID
Sbjct: 475 FREGYEIKRGPLVRRWAAEGFVGGGREWTPEEAAGKYID 513


>02_05_0031 -
           25215587-25216145,25218108-25218133,25218262-25218486,
           25219809-25220111
          Length = 370

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 346 REISLNYYNGWSRTWAPVHSASLLPVYCQR 257
           R + L   NGW R WA   S +++ V C R
Sbjct: 268 RGLELVVRNGWRRVWAEGDSKTVVDVVCDR 297


>09_06_0309 -
           22206812-22206884,22207008-22207103,22207531-22207619,
           22207738-22207820,22207932-22208048,22208132-22208319,
           22208430-22208500,22208570-22208782,22210022-22210081,
           22210186-22210476,22210590-22211894
          Length = 861

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 120 GFPIGLGLTVITVALDKFMGGGEXWAWSRARGRAID 13
           G P+   L+V   AL+    GG  W W R  GR++D
Sbjct: 305 GRPLASALSVSVYALEA--EGGGSWVWVRKDGRSMD 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,103,335
Number of Sequences: 37544
Number of extensions: 360371
Number of successful extensions: 877
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)