Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12a11
         (894 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR456924-1|CAG33205.1|   98|Homo sapiens NDUFB3 protein.               65   3e-10
BC018183-1|AAH18183.1|   98|Homo sapiens NADH dehydrogenase (ubi...    65   3e-10
AF047183-1|AAC04268.1|   98|Homo sapiens NADH-ubiquinone oxidore...    65   3e-10
AF035839-1|AAC15590.1|   98|Homo sapiens NADH:ubiquinone oxidore...    65   3e-10
AC007272-1|AAX88972.1|   98|Homo sapiens unknown protein.              65   3e-10
AL079314-1|CAB45280.1|  232|Homo sapiens hypothetical protein, s...    30   9.9  

>CR456924-1|CAG33205.1|   98|Homo sapiens NDUFB3 protein.
          Length = 98

 Score = 65.3 bits (152), Expect = 3e-10
 Identities = 31/75 (41%), Positives = 45/75 (60%)
 Frame = -1

Query: 288 VPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHPGFGTRWQRARKFFFRGFPI 109
           +P Y Q+ ++G P L+ ++K LA KGL+DPW RNEAWRY  GF  +       FF+GF  
Sbjct: 16  LPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGRNEAWRYMGGF-AKSVSFSDVFFKGFKW 73

Query: 108 GLGLTVITVALDKFM 64
           G    V+ V  + ++
Sbjct: 74  GFAAFVVAVGAEYYL 88


>BC018183-1|AAH18183.1|   98|Homo sapiens NADH dehydrogenase
           (ubiquinone) 1 beta subcomplex, 3, 12kDa protein.
          Length = 98

 Score = 65.3 bits (152), Expect = 3e-10
 Identities = 31/75 (41%), Positives = 45/75 (60%)
 Frame = -1

Query: 288 VPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHPGFGTRWQRARKFFFRGFPI 109
           +P Y Q+ ++G P L+ ++K LA KGL+DPW RNEAWRY  GF  +       FF+GF  
Sbjct: 16  LPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGRNEAWRYMGGF-AKSVSFSDVFFKGFKW 73

Query: 108 GLGLTVITVALDKFM 64
           G    V+ V  + ++
Sbjct: 74  GFAAFVVAVGAEYYL 88


>AF047183-1|AAC04268.1|   98|Homo sapiens NADH-ubiquinone
           oxidoreductase subunit CI-B12 protein.
          Length = 98

 Score = 65.3 bits (152), Expect = 3e-10
 Identities = 31/75 (41%), Positives = 45/75 (60%)
 Frame = -1

Query: 288 VPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHPGFGTRWQRARKFFFRGFPI 109
           +P Y Q+ ++G P L+ ++K LA KGL+DPW RNEAWRY  GF  +       FF+GF  
Sbjct: 16  LPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGRNEAWRYMGGF-AKSVSFSDVFFKGFKW 73

Query: 108 GLGLTVITVALDKFM 64
           G    V+ V  + ++
Sbjct: 74  GFAAFVVAVGAEYYL 88


>AF035839-1|AAC15590.1|   98|Homo sapiens NADH:ubiquinone
           oxidoreductase B12 subunit protein.
          Length = 98

 Score = 65.3 bits (152), Expect = 3e-10
 Identities = 31/75 (41%), Positives = 45/75 (60%)
 Frame = -1

Query: 288 VPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHPGFGTRWQRARKFFFRGFPI 109
           +P Y Q+ ++G P L+ ++K LA KGL+DPW RNEAWRY  GF  +       FF+GF  
Sbjct: 16  LPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGRNEAWRYMGGF-AKSVSFSDVFFKGFKW 73

Query: 108 GLGLTVITVALDKFM 64
           G    V+ V  + ++
Sbjct: 74  GFAAFVVAVGAEYYL 88


>AC007272-1|AAX88972.1|   98|Homo sapiens unknown protein.
          Length = 98

 Score = 65.3 bits (152), Expect = 3e-10
 Identities = 31/75 (41%), Positives = 45/75 (60%)
 Frame = -1

Query: 288 VPHYSQFTVKGIPQLDELEKALAVKGLKDPWIRNEAWRYHPGFGTRWQRARKFFFRGFPI 109
           +P Y Q+ ++G P L+ ++K LA KGL+DPW RNEAWRY  GF  +       FF+GF  
Sbjct: 16  LPDYRQWKIEGTP-LETIQKKLAAKGLRDPWGRNEAWRYMGGF-AKSVSFSDVFFKGFKW 73

Query: 108 GLGLTVITVALDKFM 64
           G    V+ V  + ++
Sbjct: 74  GFAAFVVAVGAEYYL 88


>AL079314-1|CAB45280.1|  232|Homo sapiens hypothetical protein,
           similar to (U06944) PRAJA1 [Mus musculus] protein.
          Length = 232

 Score = 30.3 bits (65), Expect = 9.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 85  CDYCESQSNGKSSKEEFSGSLPASAKSRVISPSLISDPWIF 207
           C  C    NG+ S  + S S  ASA +R  + S ++D W F
Sbjct: 193 CPVCRKSLNGEDSTRQ-SQSTEASASNRFSNDSQLNDRWTF 232


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,923,540
Number of Sequences: 237096
Number of extensions: 2213163
Number of successful extensions: 3666
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3666
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11492727354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)